Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400028052 | |
| PGSC0003DMT400028054 | |
| PGSC0003DMT400033569 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | PGSC0003DMT400028052 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | PGSC0003DMT400028054 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | PGSC0003DMT400033569 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111500.2.1 | Tomato | nucleus | 97.64 | 98.41 |
| GSMUA_Achr11P... | Banana | nucleus | 51.97 | 79.04 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 53.15 | 78.03 |
| KRH60702 | Soybean | nucleus | 62.6 | 75.71 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 59.45 | 74.38 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 56.3 | 73.33 |
| Zm00001d022628_P001 | Maize | nucleus | 62.6 | 72.94 |
| PGSC0003DMT400034372 | Potato | nucleus | 74.02 | 70.15 |
| KRH51400 | Soybean | nucleus | 64.57 | 69.79 |
| KRH29280 | Soybean | nucleus | 67.32 | 69.51 |
| VIT_04s0023g03710.t01 | Wine grape | nucleus | 65.75 | 69.01 |
| KRH24301 | Soybean | nucleus | 66.93 | 67.19 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 61.02 | 65.4 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 61.42 | 64.73 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 59.45 | 64.26 |
| Os09t0538400-01 | Rice | extracellular | 63.39 | 64.14 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 58.66 | 63.68 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 59.45 | 63.45 |
| EER99264 | Sorghum | nucleus | 64.96 | 62.5 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 59.06 | 62.5 |
| EES14116 | Sorghum | nucleus | 62.99 | 62.02 |
| Zm00001d006236_P002 | Maize | nucleus | 64.17 | 59.71 |
| TraesCS5B01G330100.1 | Wheat | nucleus | 61.81 | 59.7 |
| Zm00001d032024_P001 | Maize | nucleus | 59.45 | 59.45 |
| TraesCS5D01G335700.1 | Wheat | nucleus | 61.81 | 59.02 |
| TraesCS5A01G329900.1 | Wheat | nucleus | 61.81 | 58.58 |
| Zm00001d053220_P001 | Maize | nucleus | 59.45 | 58.08 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 61.42 | 57.99 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 42.91 | 56.77 |
| Bra010736.1-P | Field mustard | nucleus | 62.6 | 56.18 |
| AT4G38620.1 | Thale cress | nucleus | 62.2 | 56.03 |
| CDX90285 | Canola | nucleus | 62.2 | 55.83 |
| PGSC0003DMT400078477 | Potato | nucleus | 38.58 | 55.06 |
| CDX72743 | Canola | nucleus | 62.99 | 54.42 |
| Bra033572.1-P | Field mustard | nucleus | 62.6 | 54.08 |
| CDY22416 | Canola | nucleus | 62.6 | 54.08 |
| CDY52797 | Canola | nucleus | 53.54 | 52.71 |
| CDY12092 | Canola | nucleus | 62.2 | 51.97 |
| PGSC0003DMT400080427 | Potato | nucleus | 55.12 | 49.12 |
| PGSC0003DMT400085829 | Potato | nucleus | 34.65 | 47.57 |
| PGSC0003DMT400031607 | Potato | nucleus | 38.19 | 35.53 |
| PGSC0003DMT400079416 | Potato | nucleus | 29.53 | 34.88 |
| PGSC0003DMT400014983 | Potato | nucleus | 40.16 | 31.58 |
| PGSC0003DMT400011167 | Potato | nucleus | 32.68 | 30.74 |
| PGSC0003DMT400018841 | Potato | nucleus | 33.46 | 28.05 |
| PGSC0003DMT400023322 | Potato | nucleus | 33.46 | 23.42 |
| PGSC0003DMT400060236 | Potato | nucleus | 35.83 | 19.53 |
| PGSC0003DMT400030322 | Potato | nucleus | 2.36 | 3.66 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015803 | EnsemblPlantsGene:PGSC0003DMG400006176 | EntrezGene:102597030 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | PFAM:PF00249 | PFscan:PS51294 | PGSC:PGSC0003DMG400006176 | RefSeq:XP_006359691.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002962557 | UniProt:M1A6M0 | MapMan:15.5.2.1 | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006176]
Coordinates
chr1:-:87438016..87439876
Molecular Weight (calculated)
28787.1 Da
IEP (calculated)
8.556
GRAVY (calculated)
-0.774
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDERLISYIR THGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLLSRG IDPTTHRPVN EPGTTQKITT ISFAGGDHKT KDIEEDHNKM INVKAESGLS QLEDEISSSP FPEQCPDLNL ELRISPPSLQ
201: NYQHSPSRCF ACSLGIQNSK DCNCSKNNMG NIASYNFLGL KSNGVLDYRT LETK
101: DNEIKNYWNT HIRRKLLSRG IDPTTHRPVN EPGTTQKITT ISFAGGDHKT KDIEEDHNKM INVKAESGLS QLEDEISSSP FPEQCPDLNL ELRISPPSLQ
201: NYQHSPSRCF ACSLGIQNSK DCNCSKNNMG NIASYNFLGL KSNGVLDYRT LETK
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
Arabidopsis Description
MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.