Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P17620_001 | |
| GSMUA_Achr6P21490_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | GSMUA_Achr3P17620_001 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | GSMUA_Achr6P21490_001 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 55.27 | 78.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.1 | 76.51 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 55.7 | 76.3 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 64.14 | 74.88 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 59.92 | 72.82 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 51.9 | 70.29 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 67.51 | 66.39 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 55.7 | 62.86 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 56.96 | 62.21 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 51.48 | 61.31 |
| Solyc01g111500.2.1 | Tomato | nucleus | 64.98 | 61.11 |
| PGSC0003DMT400015803 | Potato | nucleus | 65.4 | 61.02 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 51.05 | 60.5 |
| GSMUA_Achr10P... | Banana | nucleus | 54.85 | 59.91 |
| PGSC0003DMT400034372 | Potato | nucleus | 65.4 | 57.84 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 46.84 | 57.81 |
| Solyc10g055410.1.1 | Tomato | nucleus | 66.24 | 57.51 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 55.27 | 55.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.15 | 55.15 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 53.59 | 52.7 |
| AT4G38620.1 | Thale cress | nucleus | 62.45 | 52.48 |
| Bra010736.1-P | Field mustard | nucleus | 62.45 | 52.3 |
| CDX90285 | Canola | nucleus | 62.45 | 52.3 |
| GSMUA_Achr10P... | Banana | nucleus | 45.15 | 51.94 |
| Bra033572.1-P | Field mustard | nucleus | 62.87 | 50.68 |
| CDX72743 | Canola | nucleus | 62.87 | 50.68 |
| CDY22416 | Canola | nucleus | 62.87 | 50.68 |
| CDY52797 | Canola | nucleus | 53.59 | 49.22 |
| CDY12092 | Canola | nucleus | 62.45 | 48.68 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 55.27 | 48.16 |
| GSMUA_Achr6P09620_001 | Banana | nucleus | 39.66 | 47.0 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 51.05 | 46.54 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 54.85 | 45.45 |
| GSMUA_Achr10P... | Banana | nucleus | 54.43 | 45.42 |
| GSMUA_Achr3P21000_001 | Banana | nucleus | 45.15 | 42.13 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 35.87 | 35.71 |
| GSMUA_Achr9P16040_001 | Banana | nucleus | 35.87 | 33.07 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 33.76 | 32.79 |
| GSMUA_Achr11P... | Banana | nucleus | 31.65 | 31.91 |
| GSMUA_Achr7P18550_001 | Banana | nucleus | 35.44 | 31.82 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 36.71 | 31.75 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 34.6 | 31.54 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 36.29 | 31.27 |
| GSMUA_Achr3P07940_001 | Banana | nucleus | 37.13 | 31.21 |
| GSMUA_Achr2P17960_001 | Banana | nucleus | 33.76 | 31.01 |
| GSMUA_Achr10P... | Banana | nucleus | 36.29 | 30.94 |
| GSMUA_Achr8P14540_001 | Banana | nucleus | 33.76 | 30.77 |
| GSMUA_Achr4P21700_001 | Banana | nucleus | 29.54 | 30.17 |
| GSMUA_Achr8P22690_001 | Banana | nucleus | 36.29 | 29.66 |
| GSMUA_Achr7P18560_001 | Banana | nucleus | 32.91 | 29.0 |
| GSMUA_Achr10P... | Banana | nucleus | 36.29 | 28.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.4 | 28.44 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 34.6 | 28.28 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 37.55 | 27.73 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 35.44 | 27.36 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 38.4 | 24.27 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 37.13 | 23.72 |
| GSMUA_Achr6P02530_001 | Banana | nucleus | 35.02 | 22.99 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P07550_001 | EnsemblPlants:GSMUA_Achr1T07550_001 | EnsemblPlantsGene:GSMUA_Achr1G07550_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000296A85E | UniProt:M0RXW3 | MapMan:15.5.2.1 | : |
Description
Myb-related protein Zm38 [Source:GMGC_GENE;Acc:GSMUA_Achr1G07550_001]
Coordinates
chr1:+:5850917..5852264
Molecular Weight (calculated)
27757.3 Da
IEP (calculated)
10.156
GRAVY (calculated)
-0.980
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKYTKVMD VFNVRERERE REREREKRER EEARGRNMGR SPCCEKAHTN KGAWTKEEDE RLIAHIRAHG EGCWRSLPKA AGLLRCGKSC RLRWINYLRP
101: DLKRGNFTED EDELIIKLHS LLGNKWSLIA ARLPGRTDNE IKNHWNTHIR RKLLSRGVDP ATHRPSSVWQ QQTQRPDLNL ELCISLPFQQ DPHELTKREK
201: SLCFSCSLGL QNSKECKCRD FSGLSNGMLS YRGLKMK
101: DLKRGNFTED EDELIIKLHS LLGNKWSLIA ARLPGRTDNE IKNHWNTHIR RKLLSRGVDP ATHRPSSVWQ QQTQRPDLNL ELCISLPFQQ DPHELTKREK
201: SLCFSCSLGL QNSKECKCRD FSGLSNGMLS YRGLKMK
001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
Arabidopsis Description
MYB7Transcription factor MYB7 [Source:UniProtKB/Swiss-Prot;Acc:Q42379]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.