Factsheet for GSMUA_Achr3P17620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P02420_001
GSMUA_Achr1P07550_001
GSMUA_Achr1P26520_001
GSMUA_Achr2P19380_001
GSMUA_Achr3P17620_001
GSMUA_Achr4P25710_001
GSMUA_Achr4P29160_001
GSMUA_Achr5P06530_001
GSMUA_Achr5P10240_001
GSMUA_Achr6P14840_001
GSMUA_Achr6P21490_001
GSMUA_Achr7P13700_001
GSMUA_Achr8P33900_001
GSMUA_Achr9P24180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	GSMUA_Achr10P...	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr2P19380_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr5P06530_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr6P14840_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr7P13700_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr3P17620_001	AT4G09820.1	18532977
AT4G09820.1	GSMUA_Achr6P21490_001	AT4G09820.1	18532977
AT4G09820.1	GSMUA_Achr11P...	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr1P02420_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr1P07550_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr1P26520_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr4P25710_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr8P33900_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr9P24180_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr4P29160_001	AT5G24520.1	15255866
AT4G09820.1	GSMUA_Achr5P10240_001	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P21490_001	Banana	nucleus	76.06	65.9
KRH32008	Soybean	extracellular, plastid	58.87	50.0
KRH71432	Soybean	nucleus	57.8	49.92
VIT_07s0104g00090.t01	Wine grape	nucleus	60.82	49.28
AT4G09820.1	Thale cress	nucleus	44.5	48.46
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	48.23	47.55
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	48.94	46.94
CDX86891	Canola	nucleus	42.73	46.26
CDX99505	Canola	nucleus	42.73	46.26
Solyc09g065100.1.1	Tomato	nucleus	54.79	45.44
PGSC0003DMT400033569	Potato	nucleus	47.16	45.08
Bra037887.1-P	Field mustard	nucleus	39.72	45.07
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	47.16	42.49
TraesCS1B01G112900.1	Wheat	nucleus	45.21	40.41
OQU88697	Sorghum	nucleus	46.63	38.85
TraesCS1B01G113100.4	Wheat	nucleus	47.34	38.81
Zm00001d019170_P001	Maize	nucleus	45.04	37.69
GSMUA_Achr11P...	Banana	nucleus	30.32	36.31
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	31.56	34.97
GSMUA_Achr8P11430_001	Banana	nucleus	33.33	34.43
TraesCS1D01G094200.1	Wheat	nucleus	37.94	33.91
GSMUA_Achr11P...	Banana	nucleus	31.91	32.61
GSMUA_Achr11P...	Banana	nucleus	33.16	31.53
GSMUA_Achr5P20600_001	Banana	nucleus	31.38	30.1
PGSC0003DMT400028054	Potato	cytosol	9.75	27.92
PGSC0003DMT400028052	Potato	nucleus	9.75	27.09
GSMUA_Achr1P18910_001	Banana	nucleus	18.44	26.4
GSMUA_Achr10P...	Banana	nucleus	17.55	24.81
GSMUA_Achr11P...	Banana	nucleus	19.5	24.55
GSMUA_Achr9P20820_001	Banana	nucleus	15.96	24.46
GSMUA_Achr3P00370_001	Banana	plastid	18.26	23.41
GSMUA_Achr10P...	Banana	nucleus	18.79	23.09
GSMUA_Achr2P08590_001	Banana	nucleus	10.82	22.93
GSMUA_Achr3P30620_001	Banana	nucleus	12.77	22.22
GSMUA_Achr7P04720_001	Banana	nucleus	18.26	21.96
GSMUA_Achr8P05170_001	Banana	nucleus	7.62	21.39
GSMUA_Achr7P27600_001	Banana	nucleus	12.59	21.26
GSMUA_Achr8P26280_001	Banana	cytosol	17.38	21.17
GSMUA_Achr3P26180_001	Banana	nucleus	10.99	21.02
GSMUA_Achr1P28110_001	Banana	nucleus	18.26	20.72
GSMUA_Achr2P18140_001	Banana	nucleus	17.02	20.69
GSMUA_Achr7P14640_001	Banana	nucleus	17.73	20.66
GSMUA_Achr8P05350_001	Banana	nucleus	16.49	20.62
GSMUA_Achr4P16980_001	Banana	nucleus	18.44	20.51
GSMUA_AchrUn_...	Banana	cytosol	18.79	20.5
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	16.84	20.0
GSMUA_Achr11P...	Banana	nucleus	17.02	19.96
GSMUA_Achr4P03160_001	Banana	nucleus	11.52	19.88
GSMUA_Achr6P35730_001	Banana	nucleus	17.2	19.76
GSMUA_Achr8P14720_001	Banana	nucleus	20.04	19.32
GSMUA_AchrUn_...	Banana	nucleus	10.82	18.94
GSMUA_Achr8P26460_001	Banana	nucleus	10.82	18.37
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	18.62	18.26
GSMUA_Achr5P18100_001	Banana	nucleus	15.43	17.79
GSMUA_Achr7P00800_001	Banana	cytosol	7.27	17.52
GSMUA_Achr1P08130_001	Banana	mitochondrion	17.02	17.2
GSMUA_Achr4P14580_001	Banana	nucleus	9.93	16.87
GSMUA_Achr4P03170_001	Banana	nucleus	10.11	16.72
GSMUA_Achr4P23070_001	Banana	nucleus	9.22	16.61

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr3G17620_001	EnsemblPlants:GSMUA_Achr3P17620_001	EnsemblPlants:GSMUA_Achr3T17620_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0SFH8	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296D17E	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor TT8 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17620_001]

Coordinates

chr3:-:19141053..19144458

Molecular Weight (calculated)

62869.6 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.381

Length

564 amino acids

Sequence
(BLAST)

001: MVTPPSTSLQ QTLQAVVQSV RWTYSLFWQP CPQQGILVWG DGYYNGSIKT RKTVQPVEVS TEEASLQRSQ QLRELYESLS SGEANLPARR PCAALSPEDL
101: TEAEWFYLMC ISFSFPPGVG LPGKAFARQR HVWLTRANEV DSKVFSRAIL AKSAHIQTVA CIPLVDGVLE LGNIEKVEED MALIQRAKRH FMDYFDAHTK
201: PALSEHSTSN PFARADHHHP LVDVSVPPGL TVAAAETIPA AEASELMQLE MSEDIRVGSI SDCSNNLDPE QMPAAQSICK NWNCLLEDLG NGFQQPLGTQ
301: EQDLSPEDAH YSETVSSVLR HNLKRWVGSS PFGDVIQSQK SAFSRWSSER DRLPVCSRGS CISQWLLKSV VLNIRDLHCK LSDGSSPKST DGEGGNRFQK
401: GAAQEEISAN HVLAERRRRE KLNERFMILR SLVPFELQMD KASILGDTIE YVKQLRKRIQ DLEARNRQSD RRLKAMEGSN GVGVHASVVE EDALLELQCT
501: HRDGLLLKVL QGLHELGLEV SSVHFSASNA VCNAELRAKV KEVHGKRVNI ADVKKTIDQI FSDH

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.