Factsheet for GSMUA_Achr7P04720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00370_001	Banana	plastid	65.88	70.23
GSMUA_Achr11P...	Banana	nucleus	51.39	53.79
GSMUA_Achr2P18140_001	Banana	nucleus	51.6	52.16
GSMUA_AchrUn_...	Banana	cytosol	53.73	48.74
GSMUA_Achr4P16980_001	Banana	nucleus	52.45	48.52
GSMUA_Achr5P18100_001	Banana	nucleus	50.53	48.47
GSMUA_Achr8P14720_001	Banana	nucleus	56.93	45.64
GSMUA_Achr11P...	Banana	nucleus	46.06	44.91
HORVU1Hr1G050560.1	Barley	nucleus	58.42	40.06
TraesCS1B01G208000.1	Wheat	nucleus	58.42	39.54
Os10t0575000-01	Rice	nucleus	58.85	39.48
TraesCS1D01G196900.1	Wheat	nucleus	58.21	39.28
GSMUA_Achr10P...	Banana	nucleus	33.26	39.1
Zm00001d030028_P001	Maize	nucleus	58.0	38.58
KXG39194	Sorghum	nucleus	57.57	38.19
GSMUA_Achr1P18910_001	Banana	nucleus	31.77	37.82
GSMUA_Achr9P20820_001	Banana	nucleus	29.64	37.77
Zm00001d047017_P001	Maize	nucleus	56.5	37.7
TraesCS1A01G193200.1	Wheat	nucleus	55.01	37.23
GSMUA_Achr8P05350_001	Banana	nucleus	30.92	32.15
GSMUA_Achr10P...	Banana	nucleus	29.64	30.28
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	30.06	29.68
GSMUA_Achr1P28110_001	Banana	nucleus	31.13	29.38
GSMUA_Achr8P26280_001	Banana	cytosol	29.0	29.37
GSMUA_Achr6P35730_001	Banana	nucleus	29.85	28.51
GSMUA_Achr7P14640_001	Banana	nucleus	27.29	26.45
GSMUA_Achr1P08130_001	Banana	mitochondrion	30.92	25.99
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	30.92	25.22
GSMUA_Achr8P05170_001	Banana	nucleus	9.81	22.89
GSMUA_Achr2P08590_001	Banana	nucleus	11.51	20.3
GSMUA_Achr3P26180_001	Banana	nucleus	12.37	19.66
GSMUA_Achr7P00800_001	Banana	cytosol	9.81	19.66
GSMUA_Achr11P...	Banana	nucleus	19.62	19.53
GSMUA_Achr8P11430_001	Banana	nucleus	21.75	18.68
GSMUA_Achr4P23070_001	Banana	nucleus	12.37	18.53
GSMUA_Achr4P03160_001	Banana	nucleus	12.79	18.35
GSMUA_Achr3P17620_001	Banana	nucleus	21.96	18.26
GSMUA_Achr3P30620_001	Banana	nucleus	12.58	18.21
GSMUA_Achr8P26460_001	Banana	nucleus	12.79	18.07
GSMUA_AchrUn_...	Banana	nucleus	12.37	18.01
GSMUA_Achr7P27600_001	Banana	nucleus	12.79	17.96
GSMUA_Achr11P...	Banana	nucleus	20.47	17.39
GSMUA_Achr11P...	Banana	nucleus	21.11	16.69
GSMUA_Achr6P21490_001	Banana	nucleus	22.39	16.13
GSMUA_Achr4P14580_001	Banana	nucleus	10.87	15.36
GSMUA_Achr5P20600_001	Banana	nucleus	18.55	14.8
GSMUA_Achr4P03170_001	Banana	nucleus	9.38	12.9

Protein Annotations

MapMan:15.5.32	Gene3D:3.30.450.40	Gene3D:4.10.280.10	ncoils:Coil	InterPro:GAF-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr7G04720_001	EnsemblPlants:GSMUA_Achr7P04720_001	EnsemblPlants:GSMUA_Achr7T04720_001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR029016	InterPro:IPR036638	UniProt:M0TER2	InterPro:MYC/MYB_N
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002968093	InterPro:bHLH_dom	SEG:seg	:	:

Description

Putative Transcription factor bHLH28 [Source:GMGC_GENE;Acc:GSMUA_Achr7G04720_001]

Coordinates

chr7:+:3549417..3551512

Molecular Weight (calculated)

51256.5 Da

IEP (calculated)

7.632

GRAVY (calculated)

-0.391

Length

469 amino acids

Sequence
(BLAST)

001: MNLWNDDNTS VMEAFLSSSA TVAAPDHHSF WPPLPPPPAS IPASSSSTTS STHSTVTSSA PAHFSPDTLQ QRLHSLIEGA REKWTYAIFW QSSPPSGAAV
101: LTWGDGYYRG CEEDKRKPLR SGASSAAEQE HRKHWFFLVS MTQTFAPGAG HPGQAFLSGS PAWIAGADRM AAAPCERVRQ AQAFGLRTMA CVPLESGVVE
201: LGSTHDIFQS SEILSKVRLL FGQGSGRRPA AASWPTPQPA AFLSSSADVV VAEVKSEGGC GGGNLFGADS DHSDLEASAR EVTSSAVMEP PEKRPKKRGR
301: KPANGREEPL DHVEAERQRR EKLNQRFYAL RSVVPNVSKM DKASLLADAV TYINELRSKM QALESDKRKL QPAASNWPGR CSEVEVEVKI LGWEAMIRVQ
401: CDRRCHPSAR LMIALRELDL EVYYANVSVV KDLMIQQVTV KMTSRIYTQE QLTAALFSSV TADHPPHAM

Best Arabidopsis Sequence Match ( AT5G46830.1 )
(BLAST)

001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S

Arabidopsis Description

BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.