Factsheet for GSMUA_Achr1P28110_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21870_001
GSMUA_Achr2P21770_001
GSMUA_Achr3P02140_001
GSMUA_Achr3P05920_001
GSMUA_Achr3P10270_001
GSMUA_Achr5P05170_001
GSMUA_Achr5P22110_001
GSMUA_Achr6P31050_001
GSMUA_Achr7P19850_001
GSMUA_Achr8P16780_001
GSMUA_Achr9P14370_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	GSMUA_Achr10P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr11P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr1P21870_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr2P21770_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P02140_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P05920_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P10270_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P05170_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P22110_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr6P31050_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr7P19850_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr8P16780_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr9P14370_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_AchrUn_...	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35730_001	Banana	nucleus	66.0	66.8
GSMUA_Achr8P05350_001	Banana	nucleus	52.72	58.09
GSMUA_Achr10P...	Banana	nucleus	48.09	52.07
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	49.7	52.0
GSMUA_Achr8P26280_001	Banana	cytosol	47.89	51.4
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	57.55	49.74
CDY27319	Canola	nucleus	40.04	44.92
GSMUA_Achr7P14640_001	Banana	nucleus	42.66	43.8
Bra039279.1-P	Field mustard	nucleus	40.24	43.57
CDY66312	Canola	nucleus	40.04	43.45
KRH68922	Soybean	nucleus	47.69	43.09
VIT_15s0046g00320.t01	Wine grape	nucleus	51.91	42.72
CDX80023	Canola	nucleus	40.85	41.68
Bra004532.1-P	Field mustard	nucleus	40.64	41.56
CDY56874	Canola	nucleus	41.05	41.55
Solyc01g096050.2.1	Tomato	nucleus	49.5	40.66
PGSC0003DMT400000652	Potato	nucleus	48.69	40.47
TraesCS3A01G158600.1	Wheat	nucleus	49.3	39.77
EER99993	Sorghum	nucleus	49.7	39.71
AT1G01260.1	Thale cress	nucleus	47.08	39.66
Os01t0235700-01	Rice	nucleus	49.09	39.55
TraesCS3B01G185400.1	Wheat	nucleus	49.5	39.36
KRH47899	Soybean	nucleus	49.5	39.3
Zm00001d039271_P001	Maize	nucleus	48.69	39.29
TraesCS3D01G166300.2	Wheat	nucleus	49.3	39.2
PGSC0003DMT400018046	Potato	extracellular, nucleus	45.47	39.1
KRG97199	Soybean	nucleus	48.69	39.1
TraesCS4B01G276900.1	Wheat	nucleus	46.88	38.96
TraesCS4D01G275500.1	Wheat	nucleus	46.88	38.96
TraesCS4A01G028900.1	Wheat	nucleus	46.68	38.86
KRH06456	Soybean	nucleus	48.29	38.84
Zm00001d009013_P001	Maize	nucleus	47.48	38.63
Solyc05g050560.1.1	Tomato	nucleus	44.87	38.51
AT2G46510.1	Thale cress	nucleus	43.06	37.81
CDX90021	Canola	nucleus	41.05	37.78
Bra033273.1-P	Field mustard	nucleus	44.27	37.67
EES19274	Sorghum	nucleus	44.47	37.65
HORVU3Hr1G057280.2	Barley	nucleus	49.9	32.33
GSMUA_Achr1P18910_001	Banana	nucleus	24.95	31.47
GSMUA_Achr7P04720_001	Banana	nucleus	29.38	31.13
GSMUA_Achr11P...	Banana	nucleus	27.97	31.03
GSMUA_Achr3P00370_001	Banana	plastid	27.16	30.68
GSMUA_Achr10P...	Banana	nucleus	24.55	30.58
GSMUA_Achr9P20820_001	Banana	nucleus	21.53	29.08
GSMUA_Achr2P18140_001	Banana	nucleus	26.16	28.02
GSMUA_Achr4P16980_001	Banana	nucleus	28.57	28.01
GSMUA_Achr5P18100_001	Banana	nucleus	26.56	26.99
GSMUA_Achr8P14720_001	Banana	nucleus	30.78	26.15
Zm00001d007536_P001	Maize	plastid	31.59	25.86
GSMUA_Achr11P...	Banana	nucleus	23.54	24.32
GSMUA_AchrUn_...	Banana	cytosol	24.35	23.4
GSMUA_Achr2P08590_001	Banana	nucleus	12.27	22.93
GSMUA_Achr8P05170_001	Banana	nucleus	9.05	22.39
GSMUA_Achr1P08130_001	Banana	mitochondrion	24.55	21.86
GSMUA_Achr4P03160_001	Banana	nucleus	13.48	20.49
GSMUA_Achr3P26180_001	Banana	nucleus	12.07	20.34
GSMUA_Achr8P11430_001	Banana	nucleus	21.33	19.41
GSMUA_Achr11P...	Banana	nucleus	18.31	19.32
GSMUA_Achr8P26460_001	Banana	nucleus	12.88	19.28
GSMUA_AchrUn_...	Banana	nucleus	12.27	18.94
GSMUA_Achr11P...	Banana	nucleus	20.93	18.84
GSMUA_Achr7P00800_001	Banana	cytosol	8.85	18.8
GSMUA_Achr7P27600_001	Banana	nucleus	12.27	18.26
GSMUA_Achr3P17620_001	Banana	nucleus	20.72	18.26
GSMUA_Achr3P30620_001	Banana	nucleus	11.67	17.9
GSMUA_Achr11P...	Banana	nucleus	21.13	17.71
GSMUA_Achr4P23070_001	Banana	nucleus	11.07	17.57
GSMUA_Achr6P21490_001	Banana	nucleus	21.33	16.28
GSMUA_Achr5P20600_001	Banana	nucleus	18.91	15.99
GSMUA_Achr4P14580_001	Banana	nucleus	10.46	15.66
GSMUA_Achr4P03170_001	Banana	nucleus	9.46	13.78

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr1G28110_001	EnsemblPlants:GSMUA_Achr1P28110_001	EnsemblPlants:GSMUA_Achr1T28110_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0S3R8	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002951320	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor ABA-INDUCIBLE bHLH-TYPE [Source:GMGC_GENE;Acc:GSMUA_Achr1G28110_001]

Coordinates

chr1:+:27037156..27038913

Molecular Weight (calculated)

55146.4 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.507

Length

497 amino acids

Sequence
(BLAST)

001: MRWKTGMGSP WSEEDRAMAV EVLGGRALDY LLAASHASSS DQLATVGSGV PDLQIKLQNL VEARGSPWAC AVFWQISRSR FGEFVLGWGD GHCRELGGRA
101: DDDDPRGRTT LQRMRKRVLE RLHVLSGGSD DENYALRLDQ VADPEMYFLA SMYFSFAPGE GAPGRSLLSQ KHLWIPESAF AGADYFVRAS LARTAGFRTV
201: VLVPFDTGVL ELASMDSVSE SPDELQRIKA VFIFGKDLNA APAQMNMKET VMSQFQSQKQ HQHQQQQPRP RAQPKQIDFG GSSTSSRAMP IGRLESLEFV
301: LSDAEASRNG EKPGTTEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRSVV PNISKMDKAS LLGDAISYIT ELQRKLKEME AEREMLGEPA
401: SMEQNSRTHP PQIDVDSLHD ELLVRVSCPL ATHPIAGVIQ AFGDSQIDVV DSKVVVSDDK VTHTFVVRSP GAEQLTKEKL VAAMSHEVGT KSQSTSL

Best Arabidopsis Sequence Match ( AT2G46510.1 )
(BLAST)

001: MNMSDLGWDD EDKSVVSAVL GHLASDFLRA NSNSNQNLFL VMGTDDTLNK KLSSLVDWPN SENFSWNYAI FWQQTMSRSG QQVLGWGDGC CREPNEEEES
101: KVVRSYNFNN MGAEEETWQD MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYSSGKHV WLSDAVNSES DYCFRSFMAK
201: SAGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM RRVTQPVMVT SNTNMTGGIH KLFGQDLSGA HAYPKKLEVR RNLDERFTPQ SWEGYNNNKG
301: PTFGYTPQRD DVKVLENVNM VVDNNNYKTQ IEFAGSSVAA SSNPSTNTQQ EKSESCTEKR PVSLLAGAGI VSVVDEKRPR KRGRKPANGR EEPLNHVEAE
401: RQRREKLNQR FYALRSVVPN ISKMDKASLL GDAISYIKEL QEKVKIMEDE RVGTDKSLSE SNTITVEESP EVDIQAMNEE VVVRVISPLD SHPASRIIQA
501: MRNSNVSLME AKLSLAEDTM FHTFVIKSNN GSDPLTKEKL IAAFYPETSS TQPPLPSSSS QVSGDI

Arabidopsis Description

AIBTranscription factor ABA-INDUCIBLE bHLH-TYPE [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.