Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99993 | Sorghum | nucleus | 95.29 | 94.37 |
| Zm00001d009013_P001 | Maize | nucleus | 90.75 | 91.49 |
| Os01t0235700-01 | Rice | nucleus | 81.66 | 81.52 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 66.88 | 69.01 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 66.72 | 68.73 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 66.4 | 68.39 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 82.63 | 66.36 |
| Zm00001d007536_P001 | Maize | plastid | 62.82 | 63.76 |
| GSMUA_Achr10P... | Banana | nucleus | 44.32 | 59.48 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 43.67 | 55.58 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 36.53 | 49.89 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 37.66 | 48.84 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 39.29 | 48.69 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 36.36 | 48.38 |
| CDY27319 | Canola | nucleus | 33.6 | 46.73 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 45.29 | 46.19 |
| PGSC0003DMT400000652 | Potato | nucleus | 44.81 | 46.15 |
| KRH68922 | Soybean | nucleus | 40.58 | 45.45 |
| Solyc01g096050.2.1 | Tomato | nucleus | 44.48 | 45.29 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 36.04 | 45.21 |
| CDY66312 | Canola | nucleus | 33.6 | 45.2 |
| Bra039279.1-P | Field mustard | nucleus | 33.44 | 44.88 |
| Zm00001d043706_P001 | Maize | nucleus | 33.93 | 44.75 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 41.72 | 44.46 |
| KRH47899 | Soybean | nucleus | 44.81 | 44.09 |
| Solyc05g050560.1.1 | Tomato | nucleus | 40.91 | 43.52 |
| KRH06456 | Soybean | nucleus | 43.51 | 43.37 |
| Bra004532.1-P | Field mustard | nucleus | 33.77 | 42.8 |
| CDX80023 | Canola | nucleus | 33.77 | 42.71 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 39.77 | 42.61 |
| CDY56874 | Canola | nucleus | 33.93 | 42.57 |
| KRG97199 | Soybean | nucleus | 41.4 | 41.2 |
| AT1G01260.1 | Thale cress | nucleus | 38.8 | 40.51 |
| CDX90021 | Canola | nucleus | 35.23 | 40.19 |
| AT2G46510.1 | Thale cress | nucleus | 35.88 | 39.05 |
| Bra033273.1-P | Field mustard | nucleus | 36.85 | 38.87 |
| Zm00001d006150_P001 | Maize | nucleus | 12.66 | 26.8 |
| Zm00001d052728_P001 | Maize | nucleus | 11.85 | 26.55 |
| Zm00001d031717_P001 | Maize | nucleus | 10.88 | 26.38 |
| Zm00001d021164_P001 | Maize | nucleus | 11.85 | 25.17 |
| Zm00001d047017_P001 | Maize | nucleus | 28.57 | 25.04 |
| Zm00001d030028_P001 | Maize | nucleus | 28.57 | 24.96 |
| Zm00001d038966_P001 | Maize | plastid | 6.66 | 20.1 |
| Zm00001d026009_P001 | Maize | plastid | 6.49 | 19.61 |
| Zm00001d028315_P001 | Maize | cytosol | 3.9 | 17.78 |
| Zm00001d033413_P001 | Maize | nucleus | 9.09 | 17.61 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 15.91 | 17.59 |
| Zm00001d025462_P001 | Maize | nucleus | 9.42 | 17.58 |
| Zm00001d026147_P002 | Maize | nucleus | 17.53 | 17.53 |
| Zm00001d003604_P001 | Maize | nucleus | 9.42 | 17.26 |
| Zm00001d028314_P001 | Maize | nucleus | 5.19 | 17.11 |
| Zm00001d033848_P004 | Maize | nucleus | 10.06 | 17.03 |
| Zm00001d013370_P001 | Maize | plastid | 10.23 | 16.89 |
| Zm00001d028312_P001 | Maize | nucleus | 8.6 | 16.56 |
| Zm00001d033412_P001 | Maize | nucleus | 9.74 | 16.26 |
| Zm00001d030232_P001 | Maize | nucleus | 8.28 | 15.94 |
| Zm00001d033407_P001 | Maize | nucleus | 8.93 | 15.45 |
| Zm00001d019170_P001 | Maize | nucleus | 16.56 | 15.13 |
| Zm00001d031167_P002 | Maize | nucleus | 9.42 | 14.76 |
| Zm00001d024781_P001 | Maize | nucleus | 7.47 | 13.03 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6MEW5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N |
| ProteinID:ONM28176.1 | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002208201 | EnsemblPlantsGene:Zm00001d039271 | EnsemblPlants:Zm00001d039271_P001 | EnsemblPlants:Zm00001d039271_T001 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
Transcription factor bHLH3
Coordinates
chr3:+:888050..889900
Molecular Weight (calculated)
67213.9 Da
IEP (calculated)
7.560
GRAVY (calculated)
-0.454
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMKMELEDD GALGGTAGTW TEEDRGLGAA VLGADAFAYL TKGGGAISEG LVSASLPDDL QNKLQELVES ESPGTGWNYA IFWQLSRTKS GDLVLGWGDG
101: CCREPRVGEV GAAASAGSDD TKQRMRKRVL QRLHIAFGVA DEEDYAHGID QVTDTEMFFL ASMYFAFPRC AGGPGQAFAA GIPLWVPNSE RKVFPANYCY
201: RGFLANAAGF RTIVLVPFES GVLELGSMQH IAESSDTIQT IRSVFAGTRG NKAAVQRHEG NGPAPPERSP SLAKIFGKDL NLGRPSVGVP KVDERIWEQR
301: SAGGGTSLLP SVQKGLQNFT WSQARGLNSH QQKFGNGVLI VSNEAGHRNN GAVDSPSTAQ FQLQKVPQLQ KLQLQKLPVV QKTPQLGNQQ PMQTQVPRQI
401: DFSAGSSSKP GVLVTRAAVL DGESAEVDGL CKEEGAPPVI EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI
501: TYITDLQKKL KEMETERERL LESGMVDPRE RAPRPEVDIQ VVQDEVLVRV MSPMENHPVK KVFQAFEEAE VRLGESKVTG NNNNGTVVHS FIIKCPGTEQ
601: QTREKVIAAM SRAMSS
101: CCREPRVGEV GAAASAGSDD TKQRMRKRVL QRLHIAFGVA DEEDYAHGID QVTDTEMFFL ASMYFAFPRC AGGPGQAFAA GIPLWVPNSE RKVFPANYCY
201: RGFLANAAGF RTIVLVPFES GVLELGSMQH IAESSDTIQT IRSVFAGTRG NKAAVQRHEG NGPAPPERSP SLAKIFGKDL NLGRPSVGVP KVDERIWEQR
301: SAGGGTSLLP SVQKGLQNFT WSQARGLNSH QQKFGNGVLI VSNEAGHRNN GAVDSPSTAQ FQLQKVPQLQ KLQLQKLPVV QKTPQLGNQQ PMQTQVPRQI
401: DFSAGSSSKP GVLVTRAAVL DGESAEVDGL CKEEGAPPVI EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI
501: TYITDLQKKL KEMETERERL LESGMVDPRE RAPRPEVDIQ VVQDEVLVRV MSPMENHPVK KVFQAFEEAE VRLGESKVTG NNNNGTVVHS FIIKCPGTEQ
601: QTREKVIAAM SRAMSS
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.