Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G276900.1 | Wheat | nucleus | 98.33 | 98.16 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 97.65 | 97.49 |
| Zm00001d039271_P001 | Maize | nucleus | 69.01 | 66.88 |
| EER99993 | Sorghum | nucleus | 69.68 | 66.88 |
| Os01t0235700-01 | Rice | nucleus | 69.01 | 66.77 |
| Zm00001d009013_P001 | Maize | nucleus | 67.84 | 66.28 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 67.0 | 64.94 |
| GSMUA_Achr10P... | Banana | nucleus | 42.55 | 55.34 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 43.72 | 53.93 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 37.35 | 49.45 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 37.19 | 47.95 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 38.02 | 47.79 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 38.86 | 46.68 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 46.73 | 46.19 |
| PGSC0003DMT400000652 | Potato | nucleus | 45.56 | 45.48 |
| CDY27319 | Canola | nucleus | 33.5 | 45.15 |
| Solyc01g096050.2.1 | Tomato | nucleus | 45.56 | 44.96 |
| KRH68922 | Soybean | nucleus | 41.21 | 44.73 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 35.68 | 43.38 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 33.33 | 43.36 |
| CDY66312 | Canola | nucleus | 33.17 | 43.23 |
| Bra039279.1-P | Field mustard | nucleus | 33.0 | 42.92 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 41.21 | 42.56 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 40.87 | 42.43 |
| KRH06456 | Soybean | nucleus | 43.55 | 42.07 |
| KRH47899 | Soybean | nucleus | 44.05 | 42.01 |
| Solyc05g050560.1.1 | Tomato | nucleus | 40.54 | 41.8 |
| Bra004532.1-P | Field mustard | nucleus | 33.84 | 41.56 |
| CDY56874 | Canola | nucleus | 34.17 | 41.55 |
| CDX80023 | Canola | nucleus | 33.84 | 41.48 |
| CDX90021 | Canola | nucleus | 36.85 | 40.74 |
| AT1G01260.1 | Thale cress | nucleus | 39.7 | 40.17 |
| KRG97199 | Soybean | nucleus | 41.54 | 40.06 |
| Bra033273.1-P | Field mustard | nucleus | 39.03 | 39.9 |
| AT2G46510.1 | Thale cress | nucleus | 36.18 | 38.16 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 8.88 | 26.77 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 11.89 | 25.82 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 9.55 | 25.56 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 11.56 | 25.18 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 11.73 | 25.09 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 10.55 | 24.61 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 11.39 | 24.2 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 27.14 | 23.38 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 19.1 | 20.43 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 19.26 | 20.25 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 19.26 | 19.66 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 18.76 | 19.65 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 9.21 | 16.92 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 17.59 | 16.77 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 10.05 | 16.3 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 8.71 | 16.3 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 8.54 | 16.04 |
| TraesCS5A01G555200.1 | Wheat | nucleus | 8.21 | 15.76 |
| TraesCS5A01G505100.1 | Wheat | nucleus | 7.71 | 15.38 |
| TraesCS4A01G292700.1 | Wheat | nucleus | 9.21 | 15.32 |
| TraesCS7A01G558700.1 | Wheat | nucleus | 8.21 | 15.26 |
| TraesCS5A01G555300.1 | Wheat | nucleus | 6.2 | 15.1 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 6.7 | 14.81 |
| TraesCS5A01G014800.1 | Wheat | nucleus | 9.72 | 14.76 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 9.21 | 14.59 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 9.38 | 14.58 |
| TraesCS4A01G059100.1 | Wheat | nucleus | 7.54 | 13.55 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 |
| PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 | SMART:SM00353 | SUPFAM:SSF47459 |
| EnsemblPlantsGene:TraesCS4A01G028900 | EnsemblPlants:TraesCS4A01G028900.1 | InterPro:bHLH_dom | TIGR:cd00083 | : | : |
Description
No Description!
Coordinates
chr4A:-:21063512..21065305
Molecular Weight (calculated)
65553.8 Da
IEP (calculated)
7.034
GRAVY (calculated)
-0.447
Length
597 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTEIEEEGT RGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASA LVGLQNKLQD LVEADGKSLR WNYAIFWQLS HTKSGELVLG WGDGSCREPH
101: DNEMNSTTRG DIHDASSLSQ QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPCHVG GPGQVFATGA PLWIPNNPHK VSPSNYCYRG
201: FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR SVFLGASSKK AASEKHDENS SAQISPGLAK IFGKDLNLSR PLVNTGAVPL KMNERSWDMQ
301: KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKNETSQRS NGAAHSPGLS PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ
401: AALLGGENGS VDGLCKEQVA PAMEGQPRKR GRKPANGRVE ALNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AITHITDLQK KLKEMESERD
501: MFLESGMVDR RVQTPRPEVD IQVVQDEVLV RVMSPMDNYP INNVFQAFEE AEVKVGESKI TSNNGKVMHS FVIKSPGSEQ QTREKLIAAM SRAMNSM
101: DNEMNSTTRG DIHDASSLSQ QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPCHVG GPGQVFATGA PLWIPNNPHK VSPSNYCYRG
201: FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR SVFLGASSKK AASEKHDENS SAQISPGLAK IFGKDLNLSR PLVNTGAVPL KMNERSWDMQ
301: KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKNETSQRS NGAAHSPGLS PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ
401: AALLGGENGS VDGLCKEQVA PAMEGQPRKR GRKPANGRVE ALNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AITHITDLQK KLKEMESERD
501: MFLESGMVDR RVQTPRPEVD IQVVQDEVLV RVMSPMDNYP INNVFQAFEE AEVKVGESKI TSNNGKVMHS FVIKSPGSEQ QTREKLIAAM SRAMNSM
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.