Factsheet for TraesCS5A01G558500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT1G63650.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS6A01G259400.1	AT5G24520.1	12917293
AT1G63650.1	TraesCS6B01G286700.1	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G489500.1	Wheat	nucleus	94.36	96.84
TraesCS4B01G397300.1	Wheat	nucleus	57.95	83.29
TraesCS2A01G409600.2	Wheat	nucleus, plastid	62.22	65.23
HORVU2Hr1G096810.5	Barley	nucleus	61.88	64.53
TraesCS2A01G409400.1	Wheat	nucleus	62.22	64.08
TraesCS4D01G224600.1	Wheat	nucleus	56.92	59.78
OQU81560	Sorghum	nucleus	53.33	52.97
OQU82120	Sorghum	nucleus	52.14	51.87
OQU82117	Sorghum	nucleus	51.97	51.53
Zm00001d000236_P001	Maize	nucleus, plastid	48.38	50.81
Zm00001d026147_P002	Maize	nucleus	52.14	49.51
Os01t0577300-00	Rice	cytosol	10.26	49.18
GSMUA_Achr11P...	Banana	nucleus	35.04	43.52
OQU82119	Sorghum	nucleus	39.32	42.12
Os01t0576100-00	Rice	nucleus	22.56	42.04
GSMUA_Achr8P11430_001	Banana	nucleus	36.92	39.56
GSMUA_Achr11P...	Banana	nucleus	36.07	38.22
GSMUA_Achr11P...	Banana	nucleus	36.92	36.42
GSMUA_Achr5P20600_001	Banana	nucleus	36.41	36.22
VIT_15s0046g02560.t01	Wine grape	nucleus	37.61	33.38
VIT_02s0025g03450.t01	Wine grape	nucleus	35.56	33.12
Solyc08g081140.2.1	Tomato	nucleus	34.19	31.95
KRH41187	Soybean	nucleus	34.19	31.75
KRH59908	Soybean	nucleus	33.16	30.74
AT1G63650.1	Thale cress	nucleus	31.28	30.7
Bra027653.1-P	Field mustard	nucleus	31.28	30.7
Bra027796.1-P	Field mustard	nucleus	31.11	30.03
KRH65046	Soybean	nucleus	32.99	29.83
Bra025508.1-P	Field mustard	nucleus	31.97	29.73
KRH48144	Soybean	nucleus	32.31	29.08
AT5G41315.2	Thale cress	nucleus	31.97	28.99
CDX77694	Canola	nucleus	11.97	27.67
AT4G00480.2	Thale cress	nucleus	26.84	27.07
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	27.35	25.56
Bra000970.1-P	Field mustard	nucleus	27.01	24.16
PGSC0003DMT400032140	Potato	nucleus	14.7	23.89
TraesCS3A01G252900.1	Wheat	nucleus	17.95	22.88
TraesCS1A01G369200.1	Wheat	nucleus	7.69	22.73
TraesCS2A01G448500.1	Wheat	nucleus	9.23	21.09
TraesCS5A01G306600.1	Wheat	nucleus	9.74	20.73
Bra037343.1-P	Field mustard	cytosol	24.96	20.53
TraesCS5A01G306700.1	Wheat	peroxisome	9.57	20.44
TraesCS5A01G505100.1	Wheat	nucleus	9.91	19.4
TraesCS5A01G306200.1	Wheat	nucleus	9.23	19.35
TraesCS4A01G028900.1	Wheat	nucleus	19.66	19.26
TraesCS5A01G306500.1	Wheat	nucleus	8.89	18.51
TraesCS5A01G306400.1	Wheat	nucleus	7.01	18.39
TraesCS3A01G158600.1	Wheat	nucleus	19.32	18.34
TraesCS5A01G555200.1	Wheat	nucleus	9.57	18.01
TraesCS4A01G059100.1	Wheat	nucleus	9.91	17.47
TraesCS1A01G193200.1	Wheat	nucleus	20.34	17.17
TraesCS7A01G558700.1	Wheat	nucleus	9.06	16.51
TraesCS5A01G555300.1	Wheat	nucleus	6.84	16.33
TraesCS4A01G354100.1	Wheat	nucleus	8.89	16.0
TraesCS4A01G292700.1	Wheat	nucleus	9.57	15.6
TraesCS4A01G257900.2	Wheat	nucleus	9.57	14.85
TraesCS4A01G408700.1	Wheat	nucleus	6.84	14.81
TraesCS3A01G019000.1	Wheat	nucleus	8.03	14.73
TraesCS4A01G292800.1	Wheat	nucleus	9.06	14.4
TraesCS5A01G014800.1	Wheat	nucleus	9.57	14.25
TraesCS3A01G019100.1	Wheat	nucleus	7.69	14.15
TraesCS4A01G408800.1	Wheat	nucleus	8.89	13.54

Protein Annotations

EnsemblPlants:TraesCS5A01G558500.1	EnsemblPlantsGene:TraesCS5A01G558500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:

Description

No Description!

Coordinates

chr5A:+:709193171..709197273

Molecular Weight (calculated)

64937.7 Da

IEP (calculated)

5.030

GRAVY (calculated)

-0.245

Length

585 amino acids

Sequence
(BLAST)

001: MQETAKLAWQ SMALSVSAAA PGQGQQEPPS GKQLSYQLAA AVRSINWTYA IFWSMSTGLR PPGVLTWKNG FYNGEVKTRK IISSTTTELT ADDLVLQRSE
101: QLRELYQSLL SGKADHRAKR PAASLSPEDL GEAEWYHTLS MTYAFRPGQG LPGKSFASNQ HVWLYNAQYA DTKTFQRALL AKTAPIQTVV CIPFMGGVLE
201: LGTLDLVLED PNMVNQIGTS FWELPFLACS ESELPSSNPS IDEAGNREVD IVVLEDLDHN VAKGIISELG EVECMSDVNL DHVTEEVDEF YGLIEELDVR
301: SLEDNWVMER SFEYMSSLEM APDMDARSID DAIITLSSFV KGSRPSCFTV WKRSSDCEDM VARVTGESQK LLKKAIAGGA WTTRPQESNI KTHVLSERRR
401: REKLNDMFLV LKSMVPSINK MDKASILAET ITYLRELEQR VEELETSRAP SSRPNEAMGR GIHEVVSGKK IKLSTGSKRK VLETEMEDND CPSNIVNVTV
501: MDKEVLLEVQ CRWKGLLMTR VFDAIKSLRL DIVSVHASTP EGLLDLKIRA TQQASIAPTS KLAVGSATIA PGMITEALQK AICIR

Best Arabidopsis Sequence Match ( AT5G41315.1 )
(BLAST)

001: MATGQNRTTV PENLKKHLAV SVRNIQWSYG IFWSVSASQS GVLEWGDGYY NGDIKTRKTI QASEIKADQL GLRRSEQLSE LYESLSVAES SSSGVAAGSQ
101: VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ
201: CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC
301: VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG
401: TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST
501: DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS
601: STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.