Factsheet for TraesCS4D01G224600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT1G63650.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS6A01G259400.1	AT5G24520.1	12917293
AT1G63650.1	TraesCS6B01G286700.1	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G489500.1	Wheat	nucleus	59.78	58.42
TraesCS2D01G406900.1	Wheat	nucleus	58.89	57.85
TraesCS5A01G558500.1	Wheat	nucleus	59.78	56.92
HORVU2Hr1G096810.5	Barley	nucleus	57.27	56.86
TraesCS2D01G575600.3	Wheat	nucleus, plastid	58.35	55.18
TraesCS2D01G406800.1	Wheat	plastid	45.6	54.62
TraesCS4B01G397300.1	Wheat	nucleus	37.88	51.84
OQU81560	Sorghum	nucleus	53.14	50.25
OQU82117	Sorghum	nucleus	52.96	50.0
Zm00001d000236_P001	Maize	nucleus, plastid	49.91	49.91
OQU82120	Sorghum	nucleus	52.42	49.66
Zm00001d026147_P002	Maize	nucleus	54.04	48.86
Os01t0577300-00	Rice	cytosol	10.59	48.36
OQU82119	Sorghum	nucleus	40.93	41.76
GSMUA_Achr11P...	Banana	nucleus	34.65	40.98
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	13.82	38.5
Os01t0576100-00	Rice	nucleus	20.83	36.94
GSMUA_Achr8P11430_001	Banana	nucleus	35.37	36.08
GSMUA_Achr11P...	Banana	nucleus	34.11	34.42
GSMUA_Achr11P...	Banana	nucleus	36.09	33.9
GSMUA_Achr5P20600_001	Banana	nucleus	35.01	33.16
VIT_02s0025g03450.t01	Wine grape	nucleus	37.16	32.96
Solyc08g081140.2.1	Tomato	nucleus	33.93	30.19
KRH41187	Soybean	nucleus	33.21	29.37
VIT_15s0046g02560.t01	Wine grape	nucleus	34.29	28.98
KRH59908	Soybean	nucleus	32.5	28.68
AT1G63650.1	Thale cress	nucleus	30.52	28.52
Bra025508.1-P	Field mustard	nucleus	31.96	28.3
Bra027653.1-P	Field mustard	nucleus	29.98	28.02
Bra027796.1-P	Field mustard	nucleus	30.34	27.89
AT5G41315.2	Thale cress	nucleus	31.78	27.44
KRH65046	Soybean	nucleus	29.98	25.81
CDX77694	Canola	nucleus	11.49	25.3
KRH48144	Soybean	nucleus	29.26	25.08
PGSC0003DMT400032140	Potato	nucleus	15.8	24.44
AT4G00480.2	Thale cress	nucleus	24.78	23.79
Bra000970.1-P	Field mustard	nucleus	25.67	21.87
TraesCS3D01G253700.1	Wheat	nucleus	16.88	20.22
TraesCS1D01G094200.1	Wheat	nucleus	22.44	19.81
TraesCS1D01G374800.1	Wheat	nucleus	9.34	19.62
TraesCS4D01G306400.1	Wheat	nucleus	5.75	19.39
Bra037343.1-P	Field mustard	cytosol	24.24	18.99
TraesCS7D01G102200.1	Wheat	nucleus	8.44	18.36
TraesCS4D01G235900.1	Wheat	nucleus	10.23	17.7
TraesCS5D01G313400.1	Wheat	nucleus	8.62	17.58
TraesCS5D01G313700.1	Wheat	nucleus	8.62	17.45
TraesCS5D01G313600.1	Wheat	nucleus	8.62	17.2
TraesCS5D01G313500.1	Wheat	nucleus	8.62	17.2
TraesCS4D01G275500.1	Wheat	nucleus	18.13	16.89
TraesCS3D01G166300.2	Wheat	nucleus	18.85	16.8
TraesCS1D01G196900.1	Wheat	nucleus	20.47	16.4
TraesCS4D01G330500.1	Wheat	nucleus	9.16	16.14
TraesCS4D01G056900.2	Wheat	nucleus	10.05	14.93
TraesCS5D01G517900.1	Wheat	nucleus	8.62	14.81
TraesCS4D01G019200.1	Wheat	nucleus	9.34	14.44
TraesCS4D01G018800.2	Wheat	nucleus	9.34	14.36
TraesCS5D01G020600.1	Wheat	nucleus	9.52	14.17
TraesCS4D01G018700.1	Wheat	nucleus	8.98	13.85
TraesCS4D01G306300.1	Wheat	nucleus	8.44	13.78
TraesCS4D01G019100.1	Wheat	nucleus	8.98	13.74
TraesCS3D01G014900.1	Wheat	nucleus	7.36	12.2

Protein Annotations

EnsemblPlants:TraesCS4D01G224600.1	EnsemblPlantsGene:TraesCS4D01G224600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr4D:+:381551243..381559778

Molecular Weight (calculated)

61409.0 Da

IEP (calculated)

6.959

GRAVY (calculated)

-0.329

Length

557 amino acids

Sequence
(BLAST)

001: MALSAPPSQE QPSGKQFGYQ LAAAVRSINW TYAIFWSEVL AWKDGFYNGE IKTRKIAGST TTELRATLAD PAKFALTADE RVMHRSKQLR ELHESLLPGN
101: SNNRARRPAA SLSPEDLGDG EWYYTISMTY TFHPNQGLPG KSFASNQHVW LYNAQNANTR VFPRALLAKT IVCIPLMGGV LELGTSDQVL EDPGMVKRIS
201: TSFWELHLPS SLESKDASSS TSANDTREAT DIILFEDFDH NDTVEGVTSE QREVQCLSNV NLERLTKQMD EFHILLGGLD VHPLEDRWIM DEPFEFTFSP
301: ELASAMDMPS TDDVIVTLSR SEGSRPSCFT AWKGSSELKY VPGQVVGESQ KLLTKVVAGG AWASNYGGRT TVRAQEINNN THVMTERRRR EKLNEMFLVL
401: KSLVPSVHKV DKASILTETI GYLRELKQRV DQLESSRSPS HPKETTGPSK SHVAGARKKI VSAGSKRKAP GLESPSNVAN VTMLDKVVLL EVQCPWKELL
501: MTQVFDAIKS LCLDVVSVQA STSGGRLDLK IRANQQLAAG SAIVAPGAIT EALQKAI

Best Arabidopsis Sequence Match ( AT4G00480.1 )
(BLAST)

001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF

Arabidopsis Description

ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.