Factsheet for TraesCS5D01G313500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G313600.1	Wheat	nucleus	96.77	96.77
TraesCS5B01G306800.1	Wheat	nucleus	94.98	94.64
TraesCS5A01G306500.1	Wheat	nucleus	93.55	92.88
HORVU5Hr1G079900.1	Barley	cytosol	74.55	77.04
TraesCS5D01G313700.1	Wheat	nucleus	71.33	72.36
TraesCS5D01G313400.1	Wheat	nucleus	69.89	71.43
Zm00001d006150_P001	Maize	nucleus	66.31	63.57
EER99201	Sorghum	nucleus	65.95	62.16
TraesCS7D01G102200.1	Wheat	nucleus	55.91	60.94
TraesCS1D01G374800.1	Wheat	nucleus	57.71	60.75
Zm00001d021164_P001	Maize	nucleus	63.08	60.69
Bra017527.1-P	Field mustard	nucleus	25.45	31.42
Bra013263.1-P	Field mustard	nucleus	26.16	26.94
VIT_02s0025g02610.t01	Wine grape	nucleus	31.9	24.65
Bra024992.1-P	Field mustard	nucleus	23.66	24.35
PGSC0003DMT400014089	Potato	nucleus	31.18	22.66
PGSC0003DMT400028057	Potato	nucleus	31.54	22.62
CDY70013	Canola	nucleus	20.07	22.22
Solyc10g009290.1.1	Tomato	nucleus	35.84	22.17
Solyc08g083170.1.1	Tomato	extracellular	30.47	21.96
PGSC0003DMT400047220	Potato	nucleus	35.48	21.9
KRH06400	Soybean	nucleus	36.56	21.89
Solyc10g009270.2.1	Tomato	nucleus	30.82	21.88
KRH47834	Soybean	nucleus	36.2	21.77
Solyc01g096370.2.1	Tomato	nucleus	34.77	21.56
AT4G00870.1	Thale cress	nucleus, plastid	32.62	21.51
PGSC0003DMT400014097	Potato	nucleus	34.77	21.23
VIT_15s0048g02820.t01	Wine grape	nucleus	36.92	20.72
PGSC0003DMT400031899	Potato	plastid	31.9	20.65
TraesCS4D01G306400.1	Wheat	nucleus	10.04	16.97
Solyc08g008600.2.1	Tomato	nucleus	27.24	16.81
PGSC0003DMT400015017	Potato	nucleus	27.24	16.67
Bra010178.1-P	Field mustard	nucleus	35.48	16.5
TraesCS3D01G253700.1	Wheat	nucleus	27.24	16.34
AT5G46830.1	Thale cress	nucleus	29.75	16.24
Bra024998.1-P	Field mustard	nucleus	33.69	16.21
PGSC0003DMT400002963	Potato	nucleus	34.41	16.05
AT1G32640.1	Thale cress	nucleus	35.84	16.05
AT5G46760.1	Thale cress	nucleus	33.69	15.88
Bra017520.1-P	Field mustard	nucleus	28.32	15.86
AT4G17880.1	Thale cress	nucleus	33.33	15.79
Solyc08g005050.2.1	Tomato	nucleus	26.16	15.73
VIT_02s0012g01320.t01	Wine grape	nucleus	36.56	15.38
Bra017523.1-P	Field mustard	nucleus	27.96	15.38
KRH75613	Soybean	nucleus	33.69	14.76
TraesCS4D01G019200.1	Wheat	nucleus	18.64	14.44
KRH45440	Soybean	nucleus	33.69	14.37
TraesCS4D01G306300.1	Wheat	nucleus	17.56	14.37
TraesCS1D01G196900.1	Wheat	nucleus	35.48	14.24
TraesCS4D01G330500.1	Wheat	nucleus	16.13	14.24
KRH74418	Soybean	nucleus	32.62	14.17
TraesCS4D01G018700.1	Wheat	nucleus	18.28	14.13
Solyc08g076930.1.1	Tomato	nucleus	34.77	14.08
PGSC0003DMT400045204	Potato	nucleus	34.77	13.98
TraesCS4D01G235900.1	Wheat	nucleus	16.13	13.98
TraesCS4D01G018800.2	Wheat	nucleus	17.92	13.81
TraesCS4D01G019100.1	Wheat	nucleus	17.56	13.46
TraesCS4D01G056900.2	Wheat	nucleus	17.92	13.33
Bra024993.1-P	Field mustard	nucleus	17.92	13.26
TraesCS5D01G517900.1	Wheat	nucleus	15.05	12.96
TraesCS3D01G014900.1	Wheat	nucleus	15.41	12.8
KRH39540	Soybean	nucleus	32.97	12.59
TraesCS5D01G020600.1	Wheat	nucleus	16.13	12.03
TraesCS3D01G166300.2	Wheat	nucleus	26.52	11.84
TraesCS4D01G275500.1	Wheat	nucleus	24.73	11.54
TraesCS2D01G575600.3	Wheat	nucleus, plastid	18.64	8.83
TraesCS2D01G406900.1	Wheat	nucleus	17.92	8.82
TraesCS4D01G224600.1	Wheat	nucleus	17.2	8.62
Bra013264.1-P	Field mustard	nucleus	8.96	8.42
TraesCS1D01G094200.1	Wheat	nucleus	17.2	7.61
TraesCS2D01G406800.1	Wheat	plastid	12.54	7.53
CDY70012	Canola	nucleus	5.02	5.24
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	2.51	3.5

Protein Annotations

EnsemblPlants:TraesCS5D01G313500.1	EnsemblPlantsGene:TraesCS5D01G313500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr5D:-:408658815..408659839

Molecular Weight (calculated)

30102.3 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.361

Length

279 amino acids

Sequence
(BLAST)

001: MDDELLSPCS SFFPVSPPSG QFEHHHHQFI EFASCEVPEQ WLLGDVVVPA KSEDAGDLWP EGSLLSTDSE LSELPAASLP ASTESTPRPA AKRRGRKPRP
101: RPEGPTVSHV EAERQRRDKL NRRFCDLRAA VPTVSRMDKA SLLADAAAYI AELRARVARL EDESKQAAAA RWDTNSASRS GGGASLQHFL AGDETVEVRM
201: VGRDAAALRV TTAAGSAPYA PARLMSALRS LELQVQHACV SRVQGATVQD VVVDVPAALQ HDDSAALRSA LVQRLRDSA

Best Arabidopsis Sequence Match ( AT4G00870.1 )
(BLAST)

001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL

Arabidopsis Description

BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.