Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G518400.1 | Wheat | nucleus | 93.83 | 93.54 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 93.21 | 92.92 |
| TraesCSU01G075200.1 | Wheat | nucleus | 89.51 | 89.51 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 84.88 | 83.33 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 63.89 | 57.18 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 62.96 | 56.04 |
| Os03t0671800-01 | Rice | nucleus | 53.4 | 44.94 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 22.84 | 44.85 |
| Zm00001d033407_P001 | Maize | nucleus | 48.46 | 44.1 |
| EER93684 | Sorghum | nucleus | 51.85 | 43.64 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 44.44 | 42.23 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 46.3 | 41.55 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 45.99 | 41.39 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 42.28 | 40.77 |
| TraesCS5D01G020600.1 | Wheat | nucleus | 42.9 | 37.17 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 33.02 | 28.53 |
| TraesCS4D01G330500.1 | Wheat | nucleus | 25.62 | 26.27 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 25.31 | 25.47 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 13.27 | 16.8 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 12.96 | 15.85 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 13.27 | 15.41 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 12.96 | 15.05 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 12.65 | 15.02 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 12.35 | 14.55 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 15.43 | 10.75 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 20.06 | 9.35 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 16.36 | 8.86 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 15.43 | 8.82 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 14.81 | 8.62 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 16.67 | 8.56 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 15.43 | 8.49 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 16.05 | 8.32 |
| TraesCS2D01G406800.1 | Wheat | plastid | 10.8 | 7.53 |
| TraesCS1D01G094000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 4.01 | 6.5 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G517900.1 | EnsemblPlantsGene:TraesCS5D01G517900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr5D:-:539673503..539676285
Molecular Weight (calculated)
34720.0 Da
IEP (calculated)
6.232
GRAVY (calculated)
-0.304
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSNMFIQW AMETLEQEQD GAATGHVFPS SLLELDNSAA LQNGTHMAAH RHGATDSWSS GDSGAAVAVE NDGWSSNCST NYPAASWNFI SAIPQPPSII
101: EATPSPPAAP SHVVPELAHR SPPSRKSSGA STGTVPTVQE HVMAERKRRE KINRRFIELS TVIPGLKKMD KATILSDAVR YVKEQQEKLK ALQDRDARSI
201: DSVVLVKRPC ISNGDDGCPS PPPSAAAGGG PPTTRVTLPE IEARISESNV MMRIHCQDGK GVLVTLLAEV EGLHLSITHT NVVSFPASTL IINLMAKLDE
301: GFAVTADDIV WKLDSALRGH HSGK
101: EATPSPPAAP SHVVPELAHR SPPSRKSSGA STGTVPTVQE HVMAERKRRE KINRRFIELS TVIPGLKKMD KATILSDAVR YVKEQQEKLK ALQDRDARSI
201: DSVVLVKRPC ISNGDDGCPS PPPSAAAGGG PPTTRVTLPE IEARISESNV MMRIHCQDGK GVLVTLLAEV EGLHLSITHT NVVSFPASTL IINLMAKLDE
301: GFAVTADDIV WKLDSALRGH HSGK
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.