Factsheet for TraesCS5D01G313400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G306600.1	Wheat	nucleus	95.24	95.24
TraesCS5D01G313700.1	Wheat	nucleus	75.82	75.27
TraesCS5D01G313600.1	Wheat	nucleus	72.53	70.97
TraesCS5D01G313500.1	Wheat	nucleus	71.43	69.89
Os09t0519100-00	Rice	nucleus	62.64	64.77
EER97058	Sorghum	cytosol, nucleus, plastid	57.88	57.25
TraesCS7D01G102200.1	Wheat	nucleus	52.75	56.25
TraesCS1D01G374800.1	Wheat	nucleus	53.11	54.72
Bra017527.1-P	Field mustard	nucleus	27.11	32.74
Bra013263.1-P	Field mustard	nucleus	24.91	25.09
Bra024992.1-P	Field mustard	nucleus	23.44	23.62
VIT_02s0025g02610.t01	Wine grape	nucleus	30.77	23.27
KRH06400	Soybean	nucleus	38.1	22.32
CDY70013	Canola	nucleus	20.51	22.22
KRH47834	Soybean	nucleus	37.36	21.98
Solyc10g009290.1.1	Tomato	nucleus	36.26	21.95
PGSC0003DMT400047220	Potato	nucleus	35.9	21.68
AT4G00870.1	Thale cress	nucleus, plastid	33.33	21.51
PGSC0003DMT400014097	Potato	nucleus	35.9	21.44
PGSC0003DMT400014089	Potato	nucleus	30.04	21.35
PGSC0003DMT400028057	Potato	nucleus	30.04	21.08
Solyc01g096370.2.1	Tomato	nucleus	34.07	20.67
Solyc10g009270.2.1	Tomato	nucleus	29.67	20.61
VIT_15s0048g02820.t01	Wine grape	nucleus	37.36	20.52
Solyc08g083170.1.1	Tomato	extracellular	28.94	20.41
PGSC0003DMT400031899	Potato	plastid	30.4	19.26
AT5G46830.1	Thale cress	nucleus	31.87	17.03
TraesCS4D01G306400.1	Wheat	nucleus	9.89	16.36
Bra024998.1-P	Field mustard	nucleus	34.07	16.03
Solyc08g008600.2.1	Tomato	nucleus	26.37	15.93
AT5G46760.1	Thale cress	nucleus	34.43	15.88
Bra017520.1-P	Field mustard	nucleus	28.94	15.86
Bra017523.1-P	Field mustard	nucleus	28.57	15.38
PGSC0003DMT400015017	Potato	nucleus	25.64	15.35
TraesCS3D01G253700.1	Wheat	nucleus	26.01	15.27
AT4G17880.1	Thale cress	nucleus	32.6	15.11
Bra010178.1-P	Field mustard	nucleus	32.97	15.0
TraesCS4D01G330500.1	Wheat	nucleus	17.22	14.87
AT1G32640.1	Thale cress	nucleus	33.7	14.77
KRH45440	Soybean	nucleus	35.16	14.68
KRH75613	Soybean	nucleus	34.07	14.6
Solyc08g005050.2.1	Tomato	nucleus	24.54	14.44
PGSC0003DMT400002963	Potato	nucleus	31.14	14.21
TraesCS4D01G306300.1	Wheat	nucleus	17.58	14.08
TraesCS1D01G196900.1	Wheat	nucleus	35.53	13.96
VIT_02s0012g01320.t01	Wine grape	nucleus	33.33	13.73
TraesCS4D01G235900.1	Wheat	nucleus	16.12	13.66
TraesCS4D01G019200.1	Wheat	nucleus	17.95	13.61
KRH74418	Soybean	nucleus	31.87	13.55
TraesCS4D01G018800.2	Wheat	nucleus	17.58	13.26
TraesCS4D01G018700.1	Wheat	nucleus	17.22	13.02
TraesCS4D01G019100.1	Wheat	nucleus	17.22	12.91
TraesCS3D01G014900.1	Wheat	nucleus	15.75	12.8
TraesCS5D01G517900.1	Wheat	nucleus	15.02	12.65
TraesCS5D01G020600.1	Wheat	nucleus	17.22	12.57
Solyc08g076930.1.1	Tomato	nucleus	31.5	12.48
Bra024993.1-P	Field mustard	nucleus	17.22	12.47
PGSC0003DMT400045204	Potato	nucleus	31.5	12.39
TraesCS4D01G056900.2	Wheat	nucleus	16.85	12.27
TraesCS3D01G166300.2	Wheat	nucleus	27.47	12.0
KRH39540	Soybean	nucleus	31.5	11.76
TraesCS4D01G275500.1	Wheat	nucleus	25.64	11.71
TraesCS2D01G406900.1	Wheat	nucleus	18.68	8.99
TraesCS2D01G575600.3	Wheat	nucleus, plastid	18.68	8.66
TraesCS4D01G224600.1	Wheat	nucleus	17.58	8.62
TraesCS2D01G406800.1	Wheat	plastid	13.92	8.17
Bra013264.1-P	Field mustard	nucleus	8.06	7.41
TraesCS1D01G094200.1	Wheat	nucleus	16.12	6.97
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	3.3	4.5
CDY70012	Canola	nucleus	4.4	4.49

Protein Annotations

EnsemblPlants:TraesCS5D01G313400.1	EnsemblPlantsGene:TraesCS5D01G313400	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr5D:-:408648884..408650713

Molecular Weight (calculated)

29288.4 Da

IEP (calculated)

5.207

GRAVY (calculated)

-0.415

Length

273 amino acids

Sequence
(BLAST)

001: MDELLSPCSS FLPPPPPPQL ATADENHHEV LEFTSCEVPE QWLLGDVVAA AKSEEGDYLG PEGSSSLSPD TELPPASLQA SAKKRRGRKP GPRPEGPTPS
101: HVEAERQRRE KLNRRFCDLR AAVPTVSRMD RTSLLADAAA YIAELRSRVA QLEDEGRQAA ASRWDWEVSN ASASSSRSGH AGSMHHPACD DVVEVRMVGK
201: DAAAVRVTSA GGAPHAPARL MGALRSLELQ VQHACVNCVE GVTVQDVVVD VPAALQDDGV LQCALLQRLR DNS

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.