Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G408700.1 | Wheat | nucleus | 86.67 | 52.96 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 98.18 | 44.51 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 94.55 | 43.33 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 83.03 | 40.18 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 81.82 | 36.39 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 65.45 | 32.14 |
| Zm00001d003604_P001 | Maize | nucleus | 53.33 | 26.19 |
| EES10849 | Sorghum | nucleus | 52.73 | 25.22 |
| Zm00001d033413_P001 | Maize | nucleus | 47.27 | 24.53 |
| KXG37866 | Sorghum | nucleus | 54.55 | 24.26 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 52.73 | 24.1 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 52.12 | 23.89 |
| Zm00001d025462_P001 | Maize | nucleus | 47.27 | 23.64 |
| Zm00001d033412_P001 | Maize | nucleus | 52.73 | 23.58 |
| TraesCS5D01G517900.1 | Wheat | nucleus | 44.85 | 22.84 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 49.7 | 22.65 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 49.09 | 22.25 |
| Zm00001d024781_P001 | Maize | nucleus | 46.06 | 21.53 |
| TraesCS5D01G020600.1 | Wheat | nucleus | 48.48 | 21.39 |
| EER93685 | Sorghum | mitochondrion | 47.88 | 21.24 |
| OQU75589 | Sorghum | nucleus | 48.48 | 20.78 |
| OQU77369 | Sorghum | nucleus | 52.73 | 20.71 |
| Zm00001d038966_P001 | Maize | plastid | 24.24 | 19.61 |
| Zm00001d026009_P001 | Maize | plastid | 24.24 | 19.61 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 30.3 | 13.33 |
| TraesCS4D01G330500.1 | Wheat | nucleus | 22.42 | 11.71 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 18.18 | 11.32 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 21.21 | 10.87 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 16.36 | 10.55 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 16.97 | 10.04 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 16.97 | 10.04 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 16.36 | 9.89 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 15.76 | 9.45 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 21.82 | 7.74 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 21.82 | 6.11 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 21.82 | 6.02 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 19.39 | 5.75 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 19.39 | 5.64 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 21.21 | 5.6 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 19.39 | 5.07 |
| TraesCS1D01G094000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 6.06 | 5.0 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 20.61 | 4.89 |
| TraesCS2D01G406800.1 | Wheat | plastid | 13.33 | 4.73 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G306400.1 | EnsemblPlantsGene:TraesCS4D01G306400 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:474700560..474701269
Molecular Weight (calculated)
17478.5 Da
IEP (calculated)
7.518
GRAVY (calculated)
-0.555
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSRLFMQW AVSTLQQQDP GGAGGGSEKS AGFPCLQALR DSSELTEAQN SLSSGDDTGG GGGIITPAPD LAVHQGSWSM SSPTSGGPFA PSSMSGTSTS
101: NALRASTKST PYAQDHIMAE RKRREKINQR FIELSAVIPG LKKMDKGTIL ADATRYVKEL QERVK
101: NALRASTKST PYAQDHIMAE RKRREKINQR FIELSAVIPG LKKMDKGTIL ADATRYVKEL QERVK
001: MNSLVGDVPQ SLSSLDDTTT CYNLDASCNK SLVEERPSKI LKTTHISPNL HPFSSSNPPP PKHQPSSRIL SFEKTGLHVM NHNSPNLIFS PKDEEIGLPE
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QNNNFDMKIE DVVKNLSFGL
301: SKLT
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QNNNFDMKIE DVVKNLSFGL
301: SKLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.