Factsheet for TraesCS3D01G166300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2B01G195600.1
TraesCS2D01G176800.1
TraesCS5A01G212800.1
TraesCS5B01G211000.1
TraesCS5D01G219300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	TraesCS2A01G169300.1	AT1G19180.1	21798944
AT1G01260.1	TraesCS2B01G195600.1	AT1G19180.1	21798944
AT1G01260.1	TraesCS2D01G176800.1	AT1G19180.1	21798944
AT1G01260.1	TraesCS5A01G212800.1	AT1G19180.1	21798944
AT1G01260.1	TraesCS5B01G211000.1	AT1G19180.1	21798944
AT1G01260.1	TraesCS5D01G219300.2	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G185400.1	Wheat	nucleus	98.88	98.88
TraesCS3A01G158600.1	Wheat	nucleus	97.44	98.86
HORVU3Hr1G057280.2	Barley	nucleus	96.32	78.49
TraesCS4D01G275500.1	Wheat	nucleus	63.68	66.56
EES19274	Sorghum	nucleus	58.24	62.01
GSMUA_Achr10P...	Banana	nucleus	44.0	59.91
GSMUA_Achr7P14640_001	Banana	nucleus	43.84	56.61
GSMUA_Achr8P05350_001	Banana	nucleus	35.84	49.67
GSMUA_Achr1P28110_001	Banana	nucleus	39.2	49.3
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	35.84	47.16
GSMUA_Achr8P26280_001	Banana	cytosol	34.88	47.08
KRH68922	Soybean	nucleus	40.48	46.0
CDY27319	Canola	nucleus	32.48	45.82
VIT_15s0046g00320.t01	Wine grape	nucleus	44.16	45.7
Solyc01g096050.2.1	Tomato	nucleus	43.68	45.12
PGSC0003DMT400000652	Potato	nucleus	43.04	44.98
CDY66312	Canola	nucleus	32.32	44.1
Bra039279.1-P	Field mustard	nucleus	32.16	43.79
PGSC0003DMT400018046	Potato	extracellular, nucleus	40.32	43.6
GSMUA_Achr6P35730_001	Banana	nucleus	34.24	43.58
KRH06456	Soybean	nucleus	43.04	43.53
KRH47899	Soybean	nucleus	43.36	43.29
TraesCS3D01G253700.1	Wheat	nucleus	31.84	42.8
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	39.2	42.61
Solyc05g050560.1.1	Tomato	nucleus	39.36	42.49
Bra004532.1-P	Field mustard	nucleus	32.16	41.36
KRG97199	Soybean	nucleus	40.96	41.36
CDY56874	Canola	nucleus	32.48	41.34
CDX80023	Canola	nucleus	32.16	41.27
CDX90021	Canola	nucleus	35.04	40.56
AT1G01260.1	Thale cress	nucleus	38.08	40.34
Bra033273.1-P	Field mustard	nucleus	36.48	39.04
AT2G46510.1	Thale cress	nucleus	34.88	38.52
TraesCS5D01G313400.1	Wheat	nucleus	12.0	27.47
TraesCS5D01G313700.1	Wheat	nucleus	12.0	27.27
TraesCS5D01G313600.1	Wheat	nucleus	12.0	26.88
TraesCS7D01G102200.1	Wheat	nucleus	10.88	26.56
TraesCS5D01G313500.1	Wheat	nucleus	11.84	26.52
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	8.16	25.5
TraesCS1D01G196900.1	Wheat	nucleus	28.32	25.47
TraesCS1D01G374800.1	Wheat	nucleus	10.72	25.28
TraesCS4D01G306400.1	Wheat	nucleus	5.6	21.21
TraesCS2D01G406900.1	Wheat	nucleus	18.72	20.63
TraesCS2D01G406800.1	Wheat	plastid	15.2	20.43
TraesCS4D01G224600.1	Wheat	nucleus	16.8	18.85
TraesCS2D01G575600.3	Wheat	nucleus, plastid	17.28	18.34
TraesCS4D01G306300.1	Wheat	nucleus	9.28	17.01
TraesCS3D01G014900.1	Wheat	nucleus	9.12	16.96
TraesCS4D01G019100.1	Wheat	nucleus	9.76	16.76
TraesCS4D01G018800.2	Wheat	nucleus	9.6	16.57
TraesCS4D01G330500.1	Wheat	nucleus	8.32	16.46
TraesCS5D01G517900.1	Wheat	nucleus	8.32	16.05
TraesCS4D01G056900.2	Wheat	nucleus	9.6	16.0
TraesCS4D01G235900.1	Wheat	nucleus	8.16	15.84
TraesCS4D01G019200.1	Wheat	nucleus	9.12	15.83
TraesCS5D01G020600.1	Wheat	nucleus	9.12	15.24
TraesCS4D01G018700.1	Wheat	nucleus	8.16	14.13
TraesCS1D01G094200.1	Wheat	nucleus	12.48	12.36

Protein Annotations

EnsemblPlants:TraesCS3D01G166300.2	EnsemblPlantsGene:TraesCS3D01G166300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:

Description

No Description!

Coordinates

chr3D:-:138192597..138194964

Molecular Weight (calculated)

68317.9 Da

IEP (calculated)

7.242

GRAVY (calculated)

-0.483

Length

625 amino acids

Sequence
(BLAST)

001: MPSYTGLMVM KMEVEEDGAN GGNGGAWTEE DRDLSTTVLG RDAFAYLTKG GGTISEGLVA ASSPVDLQNK LQELIESEHP GAGWNYAIFW QLSRTKSGDL
101: VLGWGDGSCR EPNDAELAAA ASAGNDDAKQ RMRKRVLQRL HRAFGAADEE DYAPTIGQVT DTEMFFLASM YFAFPRRAGA PGQVFAAGLP LWVPNSERNV
201: FPANYCYRGY LASTAGFRTI LLVPFETGVL ELGSMQQVAE SSDTLQTIKS VFAGTGGNKD IIPSREGNGH IERSPGLAKI FGKDLNLGRS SAGPVIGVSK
301: VDERSWEQRT AGGGSSVLPN VQKGLQSFTW SQARGLNSHQ QKFGNGILIV SNEATHGNNR ATDSSTTTQF QLQKAPQLQK LPLLQKPPQL VKPLQMVNQQ
401: QLQPQAPRQI DFSAGTSSKS GVLVTRAAVL DGDSSEVNGL CKEEGTTPVI EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM
501: DKASLLGDAI AYITDLQKKL KDMETERERF LESGMVDPRE RAPRPEVDIQ VVQDEVLVRV MSPLENHPVK KVFEAFEEAD VRVGESKLTG NNGTVVHSFI
601: IKCPGSEQQT REKVIAAMSR AMSSV

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.