Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P14640_001 | Banana | nucleus | 78.0 | 73.97 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 50.54 | 51.44 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 49.46 | 49.03 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 52.07 | 48.09 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 48.8 | 47.16 |
| KRH68922 | Soybean | nucleus | 54.9 | 45.82 |
| CDY27319 | Canola | nucleus | 44.01 | 45.6 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 57.08 | 45.57 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 59.7 | 45.36 |
| CDY66312 | Canola | nucleus | 44.66 | 44.76 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 59.7 | 44.48 |
| EER99993 | Sorghum | nucleus | 60.13 | 44.37 |
| Zm00001d039271_P001 | Maize | nucleus | 59.48 | 44.32 |
| Bra039279.1-P | Field mustard | nucleus | 44.01 | 44.01 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 59.91 | 44.0 |
| Os01t0235700-01 | Rice | nucleus | 59.04 | 43.92 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 59.7 | 43.84 |
| PGSC0003DMT400000652 | Potato | nucleus | 56.86 | 43.65 |
| Zm00001d009013_P001 | Maize | nucleus | 57.95 | 43.54 |
| Solyc01g096050.2.1 | Tomato | nucleus | 56.86 | 43.14 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 45.97 | 42.97 |
| CDY56874 | Canola | nucleus | 45.97 | 42.97 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 54.03 | 42.91 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 55.34 | 42.55 |
| Bra004532.1-P | Field mustard | nucleus | 44.88 | 42.39 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 55.12 | 42.31 |
| CDX80023 | Canola | nucleus | 44.88 | 42.3 |
| Solyc05g050560.1.1 | Tomato | nucleus | 53.16 | 42.14 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 54.9 | 42.14 |
| KRH47899 | Soybean | nucleus | 57.08 | 41.85 |
| KRG97199 | Soybean | nucleus | 56.21 | 41.68 |
| KRH06456 | Soybean | nucleus | 55.77 | 41.42 |
| EES19274 | Sorghum | nucleus | 49.67 | 38.84 |
| AT2G46510.1 | Thale cress | nucleus | 47.71 | 38.69 |
| CDX90021 | Canola | nucleus | 45.32 | 38.52 |
| AT1G01260.1 | Thale cress | nucleus | 48.37 | 37.63 |
| Bra033273.1-P | Field mustard | nucleus | 47.49 | 37.33 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 59.26 | 35.46 |
| GSMUA_Achr1P18910_001 | Banana | nucleus | 27.45 | 31.98 |
| GSMUA_Achr3P00370_001 | Banana | plastid | 29.19 | 30.45 |
| GSMUA_Achr11P... | Banana | nucleus | 29.63 | 30.36 |
| GSMUA_Achr7P04720_001 | Banana | nucleus | 30.28 | 29.64 |
| GSMUA_Achr10P... | Banana | nucleus | 25.71 | 29.57 |
| GSMUA_Achr9P20820_001 | Banana | nucleus | 22.88 | 28.53 |
| Zm00001d007536_P001 | Maize | plastid | 37.47 | 28.34 |
| GSMUA_Achr2P18140_001 | Banana | nucleus | 27.23 | 26.94 |
| GSMUA_Achr4P16980_001 | Banana | nucleus | 27.89 | 25.25 |
| GSMUA_Achr8P14720_001 | Banana | nucleus | 30.72 | 24.1 |
| GSMUA_Achr5P18100_001 | Banana | nucleus | 25.27 | 23.72 |
| GSMUA_Achr11P... | Banana | nucleus | 24.62 | 23.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.14 | 23.21 |
| GSMUA_Achr11P... | Banana | nucleus | 22.66 | 22.08 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 9.59 | 21.89 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 12.2 | 21.05 |
| GSMUA_Achr1P08130_001 | Banana | mitochondrion | 25.49 | 20.97 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 24.62 | 20.7 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 14.16 | 19.88 |
| GSMUA_Achr11P... | Banana | nucleus | 22.88 | 19.02 |
| GSMUA_Achr3P17620_001 | Banana | nucleus | 23.09 | 18.79 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 11.98 | 18.64 |
| GSMUA_Achr11P... | Banana | nucleus | 23.97 | 18.55 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 9.37 | 18.38 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 13.07 | 17.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 12.42 | 17.7 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 21.79 | 17.01 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 11.98 | 16.98 |
| GSMUA_Achr6P21490_001 | Banana | nucleus | 23.75 | 16.74 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 11.33 | 16.61 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 11.98 | 16.57 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 10.68 | 14.76 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 9.15 | 12.32 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr10G22310_001 | EnsemblPlants:GSMUA_Achr10P22310_001 | EnsemblPlants:GSMUA_Achr10T22310_001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M0RKF6 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294EF21 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
Putative Transcription factor bHLH3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G22310_001]
Coordinates
chr10:-:27556617..27558641
Molecular Weight (calculated)
50651.6 Da
IEP (calculated)
6.367
GRAVY (calculated)
-0.466
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDLFWSEEE RGMAAAVLGP VAFDYLAASR TSSDGLTAAA SSAEADLQSR LLDLVEGPPD RPCLGWNYAI FWQISRAKSG DLVLGWGDGS CRDLRDGEEA
101: AAAAAVARSP GDDESQQKMR RAVLQKLHVY FGGSDEDNYA LRLDQVTDAE MFFLVSMYFS FPRGKGAPGR ALAAGKHLWI LSPSDYCYRG FLAASAGFRT
201: IVVVPFDTGV LELGSVRSLA ESPNSLQTIK SVFSEDSSWD TQLKRGSGDW KNQHNPQQSL QPPPRQIDFS GGTSRAGTLI AHRRPRKRGR KPANGREEPL
301: NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKRL KEMESERERF LESNAMDHST RVHQPEVDVQ ALEDEVIVQV SSPLNTHPVS
401: KVFQALKEVQ VNVAESKVTG GGETIQHTFI IKSPGSEQQI KDKIIAALSH GSDSTEQLY
101: AAAAAVARSP GDDESQQKMR RAVLQKLHVY FGGSDEDNYA LRLDQVTDAE MFFLVSMYFS FPRGKGAPGR ALAAGKHLWI LSPSDYCYRG FLAASAGFRT
201: IVVVPFDTGV LELGSVRSLA ESPNSLQTIK SVFSEDSSWD TQLKRGSGDW KNQHNPQQSL QPPPRQIDFS GGTSRAGTLI AHRRPRKRGR KPANGREEPL
301: NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKRL KEMESERERF LESNAMDHST RVHQPEVDVQ ALEDEVIVQV SSPLNTHPVS
401: KVFQALKEVQ VNVAESKVTG GGETIQHTFI IKSPGSEQQI KDKIIAALSH GSDSTEQLY
001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
Arabidopsis Description
BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.