Factsheet for GSMUA_Achr6P21490_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P02420_001
GSMUA_Achr1P07550_001
GSMUA_Achr1P26520_001
GSMUA_Achr2P19380_001
GSMUA_Achr3P17620_001
GSMUA_Achr4P25710_001
GSMUA_Achr4P29160_001
GSMUA_Achr5P06530_001
GSMUA_Achr5P10240_001
GSMUA_Achr6P14840_001
GSMUA_Achr6P21490_001
GSMUA_Achr7P13700_001
GSMUA_Achr8P33900_001
GSMUA_Achr9P24180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	GSMUA_Achr10P...	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr2P19380_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr5P06530_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr6P14840_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr7P13700_001	AT3G13540.1	15361138
AT4G09820.1	GSMUA_Achr3P17620_001	AT4G09820.1	18532977
AT4G09820.1	GSMUA_Achr6P21490_001	AT4G09820.1	18532977
AT4G09820.1	GSMUA_Achr11P...	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr1P02420_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr1P07550_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr1P26520_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr4P25710_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr8P33900_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr9P24180_001	AT4G38620.1	15361138
AT4G09820.1	GSMUA_Achr4P29160_001	AT5G24520.1	15255866
AT4G09820.1	GSMUA_Achr5P10240_001	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P17620_001	Banana	nucleus	65.9	76.06
KRH71432	Soybean	nucleus	51.77	51.61
VIT_07s0104g00090.t01	Wine grape	nucleus	54.53	51.01
KRH32008	Soybean	extracellular, plastid	51.61	50.6
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	43.16	49.13
AT4G09820.1	Thale cress	nucleus	38.56	48.46
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	43.16	47.79
CDX99505	Canola	nucleus	37.17	46.45
CDX86891	Canola	nucleus	37.02	46.26
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	43.93	45.69
Bra037887.1-P	Field mustard	nucleus	34.41	45.07
Solyc09g065100.1.1	Tomato	nucleus	47.0	45.0
PGSC0003DMT400033569	Potato	nucleus	40.25	44.41
TraesCS1B01G112900.1	Wheat	nucleus	42.4	43.74
TraesCS1B01G113100.4	Wheat	nucleus	43.63	41.28
GSMUA_Achr11P...	Banana	nucleus	29.03	40.13
OQU88697	Sorghum	nucleus	41.63	40.03
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	30.72	39.29
Zm00001d019170_P001	Maize	nucleus	40.4	39.02
TraesCS1D01G094200.1	Wheat	nucleus	35.79	36.93
GSMUA_Achr8P11430_001	Banana	nucleus	30.41	36.26
GSMUA_Achr11P...	Banana	nucleus	30.72	36.23
GSMUA_Achr11P...	Banana	nucleus	30.88	33.9
GSMUA_Achr5P20600_001	Banana	nucleus	29.8	32.99
PGSC0003DMT400028054	Potato	cytosol	8.14	26.9
PGSC0003DMT400028052	Potato	nucleus	8.14	26.11
GSMUA_Achr1P18910_001	Banana	nucleus	15.36	25.38
GSMUA_Achr11P...	Banana	nucleus	17.2	25.0
GSMUA_Achr3P00370_001	Banana	plastid	16.13	23.86
GSMUA_Achr10P...	Banana	nucleus	16.74	23.75
GSMUA_Achr10P...	Banana	nucleus	13.98	22.81
GSMUA_Achr9P20820_001	Banana	nucleus	12.75	22.55
GSMUA_Achr7P04720_001	Banana	nucleus	16.13	22.39
GSMUA_Achr2P08590_001	Banana	nucleus	8.91	21.8
GSMUA_Achr2P18140_001	Banana	nucleus	15.36	21.55
GSMUA_Achr8P26280_001	Banana	cytosol	15.21	21.38
GSMUA_Achr1P28110_001	Banana	nucleus	16.28	21.33
GSMUA_Achr7P14640_001	Banana	nucleus	15.82	21.28
GSMUA_Achr4P16980_001	Banana	nucleus	16.28	20.91
GSMUA_AchrUn_...	Banana	cytosol	16.59	20.89
GSMUA_Achr6P35730_001	Banana	nucleus	15.67	20.77
GSMUA_Achr8P05350_001	Banana	nucleus	14.29	20.62
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	14.9	20.42
GSMUA_Achr3P30620_001	Banana	nucleus	10.14	20.37
GSMUA_Achr7P27600_001	Banana	nucleus	10.29	20.06
GSMUA_Achr8P05170_001	Banana	nucleus	5.99	19.4
GSMUA_Achr8P14720_001	Banana	nucleus	17.36	19.32
GSMUA_Achr11P...	Banana	nucleus	14.13	19.13
GSMUA_Achr4P03160_001	Banana	nucleus	9.52	18.96
GSMUA_Achr3P26180_001	Banana	nucleus	8.45	18.64
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	16.28	18.43
GSMUA_Achr5P18100_001	Banana	nucleus	12.9	17.18
GSMUA_Achr8P26460_001	Banana	nucleus	8.6	16.87
GSMUA_Achr1P08130_001	Banana	mitochondrion	14.29	16.67
GSMUA_AchrUn_...	Banana	nucleus	8.14	16.46
GSMUA_Achr7P00800_001	Banana	cytosol	5.68	15.81
GSMUA_Achr4P23070_001	Banana	nucleus	7.22	15.02
GSMUA_Achr4P03170_001	Banana	nucleus	7.83	14.96
GSMUA_Achr4P14580_001	Banana	nucleus	7.37	14.46

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr6G21490_001	EnsemblPlants:GSMUA_Achr6P21490_001	EnsemblPlants:GSMUA_Achr6T21490_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0T8Z7	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029587C6	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Transcription factor TT8 [Source:GMGC_GENE;Acc:GSMUA_Achr6G21490_001]

Coordinates

chr6:+:17787187..17790832

Molecular Weight (calculated)

72927.5 Da

IEP (calculated)

5.390

GRAVY (calculated)

-0.529

Length

651 amino acids

Sequence
(BLAST)

001: MVAPPSTGLQ QALQAVVQSV HWTYSLFWQV CPQQGTLVWG DGYYNGGIKT RKTVQPVEVS TEEASLQRSQ QLRELFESLS SGEANLPARR PCAALSPEDL
101: TEAEWFYLMC ISFSFPPGVG LPGKAFARQR HVWLTRANEV DSKAFSRAIL AKSAHVQTVV CIPLMDGVLE LGNIEKVEED MALIQHAKRF FTDYFDVHTK
201: PALSEQSASN QFASADHALY HQQAPIIHQM NMETHASNQE EDDAHDHNED YNDDDDDDGD DDGDGSCRSE LKGMRYGVDV SMHHPAVAAA AAAAEEEEAS
301: ELMQLEMSED IRVGSVSDCS NNLDVEHMPD GESKKQRQDH DFSKNWHFLL EDLGNGFGFQ QSLGTQVQDF SSEDAHYSET VSSILRHNMN RWVDASSFSY
401: LVRSHNSAFS MWSCKRDHTV SSQGSSQWLL KSVLLNIRDR LCKLGDGRDG EGGNKLQKCA TQEEVSANHV LAERRRREKL NERFMVLRSL VPFVTKMDKA
501: SILGDTIEYI EQLRRRIQDL EGRNRQQSSK RQCGSQVGNC KLDVQRRVGL SADKRKLQVL EGSNGMATTS VHVSMAEADA LLELHCPCRD GLLLDIMQTL
601: HELGLEVSSL QCSSTNGVFG AEMRSKMKEA YGRRVDIVEL KKAIHQIISD H

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.