Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr3P17620_001 | |
GSMUA_Achr6P21490_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G38620.1 | GSMUA_Achr3P17620_001 | AT4G09820.1 | 15361138 |
AT4G38620.1 | GSMUA_Achr6P21490_001 | AT4G09820.1 | 15361138 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr11P... | Banana | nucleus | 74.57 | 77.25 |
GSMUA_AchrUn_... | Banana | nucleus | 65.9 | 76.51 |
GSMUA_Achr2P20600_001 | Banana | nucleus | 71.68 | 70.86 |
GSMUA_Achr8P33900_001 | Banana | nucleus | 76.88 | 65.52 |
GSMUA_Achr1P02420_001 | Banana | nucleus | 73.41 | 65.13 |
KRH60702 | Soybean | nucleus | 76.3 | 62.86 |
GSMUA_Achr6P07260_001 | Banana | mitochondrion | 68.79 | 59.8 |
GSMUA_Achr10P... | Banana | nucleus | 73.99 | 58.99 |
GSMUA_Achr1P26520_001 | Banana | nucleus | 80.35 | 57.68 |
GSMUA_Achr5P26000_001 | Banana | nucleus | 69.94 | 57.62 |
GSMUA_Achr3P22200_001 | Banana | nucleus | 71.68 | 57.14 |
GSMUA_Achr8P32480_001 | Banana | nucleus | 65.32 | 56.5 |
KRH51400 | Soybean | nucleus | 75.72 | 55.74 |
GSMUA_Achr1P07550_001 | Banana | nucleus | 76.3 | 55.7 |
VIT_03s0038g02310.t01 | Wine grape | nucleus | 80.35 | 55.38 |
GSMUA_AchrUn_... | Banana | nucleus | 61.27 | 54.64 |
KRH29280 | Soybean | nucleus | 76.88 | 54.06 |
GSMUA_Achr4P25710_001 | Banana | nucleus | 59.54 | 53.65 |
PGSC0003DMT400015803 | Potato | nucleus | 78.03 | 53.15 |
Solyc01g111500.2.1 | Tomato | nucleus | 76.88 | 52.78 |
KRH24301 | Soybean | nucleus | 76.88 | 52.57 |
GSMUA_Achr6P25420_001 | Banana | nucleus | 70.52 | 51.48 |
GSMUA_Achr10P... | Banana | nucleus | 59.54 | 50.0 |
PGSC0003DMT400034372 | Potato | nucleus | 76.3 | 49.25 |
Solyc10g055410.1.1 | Tomato | nucleus | 77.46 | 49.08 |
GSMUA_Achr5P17010_001 | Banana | nucleus | 68.21 | 48.96 |
GSMUA_Achr9P08600_001 | Banana | nucleus | 72.25 | 45.96 |
GSMUA_Achr6P09620_001 | Banana | nucleus | 52.6 | 45.5 |
AT4G38620.1 | Thale cress | nucleus | 73.99 | 45.39 |
Bra010736.1-P | Field mustard | nucleus | 73.41 | 44.88 |
CDX90285 | Canola | nucleus | 73.41 | 44.88 |
Bra033572.1-P | Field mustard | nucleus | 74.57 | 43.88 |
CDX72743 | Canola | nucleus | 74.57 | 43.88 |
CDY22416 | Canola | nucleus | 74.57 | 43.88 |
CDY52797 | Canola | nucleus | 64.16 | 43.02 |
GSMUA_Achr6P12930_001 | Banana | nucleus | 71.1 | 43.01 |
GSMUA_Achr5P01180_001 | Banana | nucleus | 64.16 | 42.69 |
CDY12092 | Canola | nucleus | 73.41 | 41.78 |
GSMUA_Achr10P... | Banana | nucleus | 68.21 | 41.55 |
GSMUA_Achr3P21000_001 | Banana | nucleus | 60.69 | 41.34 |
GSMUA_Achr3P07950_001 | Banana | nucleus | 49.71 | 36.13 |
GSMUA_Achr11P... | Banana | nucleus | 45.09 | 33.19 |
GSMUA_Achr3P27700_001 | Banana | nucleus | 51.45 | 32.48 |
GSMUA_Achr9P27380_001 | Banana | nucleus | 48.55 | 32.31 |
GSMUA_Achr9P16040_001 | Banana | nucleus | 47.4 | 31.91 |
GSMUA_Achr7P18550_001 | Banana | nucleus | 48.55 | 31.82 |
GSMUA_Achr4P21700_001 | Banana | nucleus | 42.2 | 31.47 |
GSMUA_Achr7P18560_001 | Banana | nucleus | 48.55 | 31.23 |
GSMUA_Achr8P14540_001 | Banana | nucleus | 46.82 | 31.15 |
GSMUA_Achr2P17960_001 | Banana | nucleus | 46.24 | 31.01 |
GSMUA_Achr6P04400_001 | Banana | nucleus | 49.13 | 30.91 |
GSMUA_Achr2P19380_001 | Banana | nucleus | 43.35 | 30.74 |
GSMUA_Achr3P07940_001 | Banana | nucleus | 49.13 | 30.14 |
GSMUA_Achr10P... | Banana | nucleus | 47.98 | 29.86 |
GSMUA_Achr8P22690_001 | Banana | nucleus | 49.13 | 29.31 |
GSMUA_Achr10P... | Banana | nucleus | 49.13 | 28.52 |
GSMUA_AchrUn_... | Banana | nucleus | 52.02 | 28.12 |
GSMUA_Achr6P14840_001 | Banana | nucleus | 46.24 | 27.59 |
GSMUA_Achr5P21250_001 | Banana | nucleus | 50.87 | 27.41 |
GSMUA_Achr7P13700_001 | Banana | nucleus | 47.98 | 27.04 |
GSMUA_Achr8P10470_001 | Banana | nucleus | 52.02 | 24.26 |
GSMUA_Achr6P02530_001 | Banana | nucleus | 48.55 | 23.27 |
GSMUA_Achr5P06530_001 | Banana | nucleus | 49.13 | 22.67 |
Protein Annotations
EnsemblPlants:GSMUA_Achr9P24180_001 | EnsemblPlants:GSMUA_Achr9T24180_001 | EnsemblPlantsGene:GSMUA_Achr9G24180_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
UniParc:UPI000295AE12 | UniProt:M0U325 | MapMan:15.5.2.1 | : | : | : |
Description
Myb-related protein 308 [Source:GMGC_GENE;Acc:GSMUA_Achr9G24180_001]
Coordinates
chr9:-:28998002..28998664
Molecular Weight (calculated)
19742.8 Da
IEP (calculated)
9.638
GRAVY (calculated)
-0.688
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCERA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGKLPGRT
101: DNEIKNYWNT HIRKKLLSMG VDPATHRPIH DSAATITAET SARRQHHRPP KCPDLNLELC ISPPFQQAPL HPI
101: DNEIKNYWNT HIRKKLLSMG VDPATHRPIH DSAATITAET SARRQHHRPP KCPDLNLELC ISPPFQQAPL HPI
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
Arabidopsis Description
MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.