Factsheet for Bra010736.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 25305244

gfp PMID: 25305244 doi

L Zhang, Y Wang, M Sun, J Wang, S Kawabata, Y Li

College of Life Science, Northeast Forestry University, Harbin 150040, China., Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo, Tokyo, 113-8654 Japan lyhshen@126.com ayuki@mail.ecc.u-tokyo.ac.jp., State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China College of Life Science, Northeast Forestry University, Harbin 150040, China lyhshen@126.com ayuki@mail.ecc.u-tokyo.ac.jp., State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China College of Life Science, Northeast Forestry University, Harbin 150040, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38620.1	Bra037887.1-P	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90285	Canola	nucleus	98.94	98.94
CDY12092	Canola	nucleus	96.82	90.13
AT4G38620.1	Thale cress	nucleus	84.81	85.11
Bra033572.1-P	Field mustard	nucleus	85.87	82.65
GSMUA_Achr11P...	Banana	nucleus	44.17	74.85
GSMUA_Achr9P24180_001	Banana	nucleus	44.88	73.41
GSMUA_Achr8P33900_001	Banana	nucleus	51.94	72.41
Zm00001d022628_P001	Maize	nucleus	54.77	71.1
KRH60702	Soybean	nucleus	52.3	70.48
GSMUA_Achr1P02420_001	Banana	nucleus	48.41	70.26
VIT_04s0023g03710.t01	Wine grape	nucleus	55.83	65.29
KRH51400	Soybean	nucleus	53.71	64.68
KRH29280	Soybean	nucleus	55.83	64.23
Os09t0538400-01	Rice	extracellular	56.54	63.74
TraesCS7D01G272400.1	Wheat	nucleus	52.3	63.25
Solyc01g111500.2.1	Tomato	nucleus	56.18	63.1
TraesCS7B01G169900.1	Wheat	nucleus	52.3	62.98
PGSC0003DMT400015803	Potato	nucleus	56.18	62.6
GSMUA_Achr1P07550_001	Banana	nucleus	52.3	62.45
HORVU7Hr1G057410.1	Barley	nucleus	52.3	62.18
KRH24301	Soybean	nucleus	55.48	62.06
TraesCS7A01G272100.1	Wheat	nucleus	51.94	61.25
EER99264	Sorghum	nucleus	56.18	60.23
PGSC0003DMT400034372	Potato	nucleus	56.54	59.7
Solyc10g055410.1.1	Tomato	nucleus	57.24	59.34
GSMUA_Achr1P26520_001	Banana	nucleus	50.53	59.34
TraesCS5B01G330100.1	Wheat	nucleus	54.42	58.56
TraesCS5D01G335700.1	Wheat	nucleus	54.77	58.27
Zm00001d006236_P002	Maize	nucleus	55.83	57.88
TraesCS5A01G329900.1	Wheat	nucleus	54.77	57.84
EES14116	Sorghum	nucleus	52.65	57.75
HORVU5Hr1G083910.2	Barley	nucleus	54.42	57.25
Bra017685.1-P	Field mustard	nucleus	54.77	57.2
Zm00001d032024_P001	Maize	nucleus	51.24	57.09
Zm00001d053220_P001	Maize	nucleus	51.94	56.54
Bra011576.1-P	Field mustard	nucleus	56.18	55.4
GSMUA_Achr4P25710_001	Banana	nucleus	37.46	55.21
Bra013055.1-P	Field mustard	nucleus	54.77	53.82
Bra000680.1-P	Field mustard	nucleus	42.4	53.57
Bra024526.1-P	Field mustard	nucleus	47.35	49.81
Bra012337.1-P	Field mustard	nucleus	45.58	46.74
Bra022602.1-P	Field mustard	nucleus	28.27	40.4
Bra008740.1-P	Field mustard	nucleus	27.56	39.59
Bra023486.1-P	Field mustard	nucleus	25.8	38.83
Bra039395.1-P	Field mustard	nucleus	33.22	37.45
Bra029113.1-P	Field mustard	nucleus	26.15	37.19
Bra027423.1-P	Field mustard	nucleus	32.16	35.69
Bra035532.1-P	Field mustard	nucleus	31.1	33.85
Bra025311.1-P	Field mustard	nucleus	24.73	31.11
Bra039065.1-P	Field mustard	nucleus	20.85	29.65
Bra025589.1-P	Field mustard	nucleus	26.15	29.02
Bra000453.1-P	Field mustard	nucleus	35.34	26.6
Bra037419.1-P	Field mustard	nucleus	32.16	26.53
Bra036145.1-P	Field mustard	nucleus	32.16	26.22
Bra004456.1-P	Field mustard	nucleus	24.38	18.9

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra010736	EnsemblPlants:Bra010736.1	EnsemblPlants:Bra010736.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009751	GO:GO:0009753	GO:GO:0009987
GO:GO:0010224	GO:GO:0019748	GO:GO:0045892	GO:GO:1903086	GO:GO:2000762	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M4D2N3	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF741	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002546B56	SEG:seg

Description

AT4G38620 (E=1e-128) ATMYB4, MYB4 | MYB4; DNA binding / transcription factor

Coordinates

chrA08:-:16179512..16180517

Molecular Weight (calculated)

31650.8 Da

IEP (calculated)

8.356

GRAVY (calculated)

-0.538

Length

283 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLTAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEDEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTTHRPVQ ESSSASQDSK PTQLIEAITS NNTINISFTS TPKMESTSCF QVKPEKISML TFKEEKDEFL TEEKLPDLNL
201: ELRISLPDVV EGKSTRARCF RCSLGMINGM ECRCGSIRCD VVGGSSGSTG NGGDISHGFD FLGLATKETT TTSLLGFRSL EMI

Best Arabidopsis Sequence Match ( AT4G38620.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK

Arabidopsis Description

MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.