Factsheet for Bra039065.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27920.1	Bra027653.1-P	AT1G63650.1	12917293
AT3G27920.1	Bra027796.1-P	AT1G63650.1	12917293
AT3G27920.1	Bra027653.1-P	AT1G63650.1	15361138
AT3G27920.1	Bra027796.1-P	AT1G63650.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025311.1-P	Field mustard	nucleus	79.4	70.22
AT3G27920.1	Thale cress	nucleus	71.36	62.28
Bra023486.1-P	Field mustard	nucleus	47.24	50.0
Bra008740.1-P	Field mustard	nucleus	49.25	49.75
Bra025589.1-P	Field mustard	nucleus	54.27	42.35
VIT_14s0066g01220.t01	Wine grape	nucleus	45.23	41.47
Bra022602.1-P	Field mustard	nucleus	32.66	32.83
Bra029113.1-P	Field mustard	nucleus	31.66	31.66
GSMUA_Achr3P07950_001	Banana	nucleus	31.66	26.47
Bra039395.1-P	Field mustard	nucleus	32.66	25.9
Bra000680.1-P	Field mustard	nucleus	28.14	25.0
GSMUA_Achr3P27700_001	Banana	nucleus	33.67	24.45
Bra027423.1-P	Field mustard	nucleus	31.16	24.31
Bra035532.1-P	Field mustard	nucleus	31.16	23.85
Bra017685.1-P	Field mustard	nucleus	29.65	21.77
Bra024526.1-P	Field mustard	nucleus	29.15	21.56
Bra012337.1-P	Field mustard	nucleus	29.15	21.01
Bra011576.1-P	Field mustard	nucleus	30.15	20.91
Bra010736.1-P	Field mustard	nucleus	29.65	20.85
Bra033572.1-P	Field mustard	nucleus	30.65	20.75
Bra013055.1-P	Field mustard	nucleus	29.15	20.14
Bra037419.1-P	Field mustard	nucleus	31.16	18.08
Bra036145.1-P	Field mustard	nucleus	30.65	17.58
Bra000453.1-P	Field mustard	nucleus	28.14	14.89
Bra004456.1-P	Field mustard	nucleus	19.1	10.41

Protein Annotations

EnsemblPlants:Bra039065.1	EnsemblPlants:Bra039065.1-P	EnsemblPlantsGene:Bra039065	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF625	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002541B9F	UniProt:M4FD95	MapMan:15.5.2.1	:	:	:

Description

AT3G27920 (E=3e-075) GL1, ATMYB0, ATGL1 | ATMYB0 (MYB DOMAIN PROTEIN 0); DNA binding / protein binding / transcription activator/ transcription factor

Coordinates

chrA09:-:1293505..1294681

Molecular Weight (calculated)

22727.8 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.700

Length

199 amino acids

Sequence
(BLAST)

001: MDYVQTHGKG HWNRIVRKTG LKRCGKSCRL RWINYLSPSV NKGNFTEQEE DLIIRLHKLL GNRWSLIAKR VPGRTDNQVK NHWNTHLSKK FVGDYSSGVK
101: TTGENKASLL LATASSRQHQ QDKICDKSFD GLVPASYENK PNADLTHRNV VVGNTNDPSL YLKERNIFDS SNAFWFNEDE FELMSSLAMM DFASGDIGY

Best Arabidopsis Sequence Match ( AT3G27920.1 )
(BLAST)

001: MRIRRRDEKE NQEYKKGLWT VEEDNILMDY VLNHGTGQWN RIVRKTGLKR CGKSCRLRWM NYLSPNVNKG NFTEQEEDLI IRLHKLLGNR WSLIAKRVPG
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL

Arabidopsis Description

GL1Trichome differentiation protein GL1 [Source:UniProtKB/Swiss-Prot;Acc:P27900]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.