Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027653.1-P | |
| Bra027796.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G27920.1 | Bra027653.1-P | AT1G63650.1 | 12917293 |
| AT3G27920.1 | Bra027796.1-P | AT1G63650.1 | 12917293 |
| AT3G27920.1 | Bra027653.1-P | AT1G63650.1 | 15361138 |
| AT3G27920.1 | Bra027796.1-P | AT1G63650.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86461 | Canola | nucleus | 100.0 | 100.0 |
| Bra039065.1-P | Field mustard | nucleus | 70.22 | 79.4 |
| AT3G27920.1 | Thale cress | nucleus | 79.11 | 78.07 |
| Bra023486.1-P | Field mustard | nucleus | 48.0 | 57.45 |
| Bra008740.1-P | Field mustard | nucleus | 49.78 | 56.85 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 46.67 | 48.39 |
| Bra025589.1-P | Field mustard | nucleus | 54.67 | 48.24 |
| Bra022602.1-P | Field mustard | nucleus | 34.22 | 38.89 |
| Bra029113.1-P | Field mustard | nucleus | 32.0 | 36.18 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 32.44 | 30.67 |
| Bra039395.1-P | Field mustard | nucleus | 33.78 | 30.28 |
| Bra000680.1-P | Field mustard | nucleus | 29.78 | 29.91 |
| Bra027423.1-P | Field mustard | nucleus | 33.33 | 29.41 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 34.67 | 28.47 |
| Bra035532.1-P | Field mustard | nucleus | 30.67 | 26.54 |
| Bra024526.1-P | Field mustard | nucleus | 30.67 | 25.65 |
| Bra017685.1-P | Field mustard | nucleus | 30.67 | 25.46 |
| Bra012337.1-P | Field mustard | nucleus | 31.11 | 25.36 |
| Bra010736.1-P | Field mustard | nucleus | 31.11 | 24.73 |
| Bra033572.1-P | Field mustard | nucleus | 32.0 | 24.49 |
| Bra011576.1-P | Field mustard | nucleus | 31.11 | 24.39 |
| Bra013055.1-P | Field mustard | nucleus | 29.78 | 23.26 |
| Bra037419.1-P | Field mustard | nucleus | 30.67 | 20.12 |
| Bra036145.1-P | Field mustard | nucleus | 29.78 | 19.31 |
| Bra000453.1-P | Field mustard | nucleus | 29.33 | 17.55 |
| Bra004456.1-P | Field mustard | nucleus | 19.56 | 12.05 |
Protein Annotations
| EnsemblPlants:Bra025311.1 | EnsemblPlants:Bra025311.1-P | EnsemblPlantsGene:Bra025311 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF625 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000253FC2D | UniProt:M4E955 | MapMan:15.5.2.1 | : | : | : |
Description
AT3G27920 (E=3e-091) GL1, ATMYB0, ATGL1 | ATMYB0 (MYB DOMAIN PROTEIN 0); DNA binding / protein binding / transcription activator/ transcription factor
Coordinates
chrA06:+:22250800..22252366
Molecular Weight (calculated)
26074.4 Da
IEP (calculated)
7.922
GRAVY (calculated)
-0.871
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRRRTEEE NHQEYKKGLW TVEEDNILRD YVLTHGKGQW NRIVRKTGLK RCGKSCRLRW INYLSPNVNK GNFTEQEEDL IIRLHKLLGN RWSLIAKRVP
101: GRTDNQVKNH WNTHLSKKIV GDYSSAVKTT GEENYPPSLL ITAATTSCHH QQDKICEKSF EGLVSASYED KQKADLAHTN DSSFYFKAGN NFDSSNAFWF
201: NDDDDFEMNS FAMMDFASGD TGYCL
101: GRTDNQVKNH WNTHLSKKIV GDYSSAVKTT GEENYPPSLL ITAATTSCHH QQDKICEKSF EGLVSASYED KQKADLAHTN DSSFYFKAGN NFDSSNAFWF
201: NDDDDFEMNS FAMMDFASGD TGYCL
001: MRIRRRDEKE NQEYKKGLWT VEEDNILMDY VLNHGTGQWN RIVRKTGLKR CGKSCRLRWM NYLSPNVNKG NFTEQEEDLI IRLHKLLGNR WSLIAKRVPG
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL
Arabidopsis Description
GL1Trichome differentiation protein GL1 [Source:UniProtKB/Swiss-Prot;Acc:P27900]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.