Factsheet for Bra027423.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	Bra027653.1-P	AT1G63650.1	15361138
AT3G13540.1	Bra027796.1-P	AT1G63650.1	15361138
AT3G13540.1	Bra037887.1-P	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59254	Canola	nucleus	98.43	98.43
CDY23616	Canola	nucleus	85.1	95.18
Bra039395.1-P	Field mustard	nucleus	81.96	83.27
AT3G13540.1	Thale cress	nucleus	79.61	81.53
GSMUA_Achr2P19380_001	Banana	nucleus	45.1	47.13
GSMUA_Achr6P14840_001	Banana	nucleus	51.76	45.52
GSMUA_Achr10P...	Banana	nucleus	50.98	43.62
Zm00001d011645_P001	Maize	nucleus	39.22	43.48
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	52.16	42.63
VIT_08s0007g07230.t01	Wine grape	nucleus	52.94	42.19
Bra008740.1-P	Field mustard	nucleus	32.55	42.13
Bra023486.1-P	Field mustard	nucleus	30.59	41.49
TraesCS3A01G257800.1	Wheat	nucleus	41.96	40.38
Os01t0695900-01	Rice	nucleus	43.53	40.36
Solyc01g005660.1.1	Tomato	nucleus, plastid	48.63	40.26
TraesCS3D01G257800.1	Wheat	nucleus	42.35	39.85
TraesCS3B01G290600.1	Wheat	nucleus	42.35	39.71
Bra000680.1-P	Field mustard	nucleus	34.12	38.84
HORVU0Hr1G006810.2	Barley	nucleus	40.0	38.06
Bra022602.1-P	Field mustard	nucleus	29.41	37.88
KXG33190	Sorghum	nucleus	41.57	37.86
KRH17997	Soybean	nucleus, plastid	52.55	37.85
GSMUA_Achr7P13700_001	Banana	nucleus	45.1	37.46
KRH16413	Soybean	nucleus	51.76	36.57
Bra029113.1-P	Field mustard	nucleus	28.24	36.18
Bra024526.1-P	Field mustard	nucleus	36.47	34.57
GSMUA_Achr5P06530_001	Banana	nucleus	50.2	34.13
Bra012337.1-P	Field mustard	nucleus	36.08	33.33
Bra025311.1-P	Field mustard	nucleus	29.41	33.33
Bra025589.1-P	Field mustard	nucleus	32.55	32.55
Bra017685.1-P	Field mustard	nucleus	34.51	32.47
Bra010736.1-P	Field mustard	nucleus	35.69	32.16
Bra011576.1-P	Field mustard	nucleus	35.29	31.36
Bra013055.1-P	Field mustard	nucleus	35.29	31.25
Bra039065.1-P	Field mustard	nucleus	24.31	31.16
Bra035532.1-P	Field mustard	nucleus	31.37	30.77
Bra033572.1-P	Field mustard	nucleus	35.29	30.61
Bra037419.1-P	Field mustard	nucleus	32.16	23.91
Bra036145.1-P	Field mustard	nucleus	31.76	23.34
Bra000453.1-P	Field mustard	nucleus	32.94	22.34
Bra004456.1-P	Field mustard	nucleus	25.88	18.08

Protein Annotations

EnsemblPlants:Bra027423.1	EnsemblPlants:Bra027423.1-P	EnsemblPlantsGene:Bra027423	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF740	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002547FA3	UniProt:M4EF61	MapMan:15.5.2.1	:	:	:

Description

AT3G13540 (E=1e-110) ATMYB5 | ATMYB5 (MYB DOMAIN PROTEIN 5); DNA binding / transcription factor

Coordinates

chrA05:-:20826774..20831650

Molecular Weight (calculated)

28622.0 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.684

Length

255 amino acids

Sequence
(BLAST)

001: MLKTVDMTSS NGKRSVAKKM TTPCCTKMGM KRGPWTVEED KILVSFIKKE GEGRWRSLPK RAGLLRCGKS CRLRWMNYLR PSVKRGGIAP DEEDLILRLH
101: RLIGNKWSLI AGRIPGRTDN EIKNYWNTHL RKKLLSQGID PQTHKPLDAN NTHKPREEVS GGQNLLEPNS SSHTDDTTVS RGSGAGKISV SVFGDEDFGF
201: CYDDKFSSFL NSVINDDPFD SNIPIISHPL QTHDFIDEIV GTSSSLGHDQ RPEDL

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.