CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU81560
OQU82117
OQU82119
OQU82120
OQU88697

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	OQU81560	AT1G63650.1	15361138
AT3G13540.1	OQU82117	AT1G63650.1	15361138
AT3G13540.1	OQU82119	AT1G63650.1	15361138
AT3G13540.1	OQU82120	AT1G63650.1	15361138
AT3G13540.1	OQU88697	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011645_P001	Maize	nucleus	64.64	78.7
TraesCS3D01G257800.1	Wheat	nucleus	59.29	61.25
TraesCS3B01G290600.1	Wheat	nucleus	58.93	60.66
TraesCS3A01G257800.1	Wheat	nucleus	56.79	60.0
Os01t0695900-01	Rice	nucleus	57.5	58.55
HORVU0Hr1G006810.2	Barley	nucleus	53.57	55.97
CDY23616	Canola	nucleus	37.5	46.05
AT3G13540.1	Thale cress	nucleus	38.93	43.78
GSMUA_Achr2P19380_001	Banana	nucleus	37.86	43.44
CDY24177	Canola	nucleus	38.93	43.43
CDY07085	Canola	nucleus	38.57	43.03
EES16743	Sorghum	nucleus	32.86	42.79
Bra039395.1-P	Field mustard	nucleus	38.21	42.63
CDY59254	Canola	nucleus	38.21	41.96
GSMUA_Achr6P14840_001	Banana	nucleus	43.21	41.72
Bra027423.1-P	Field mustard	nucleus	37.86	41.57
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	44.29	39.74
GSMUA_Achr10P...	Banana	nucleus	42.14	39.6
Solyc01g005660.1.1	Tomato	nucleus, plastid	43.21	39.29
VIT_08s0007g07230.t01	Wine grape	nucleus	43.57	38.12
KXG22070	Sorghum	nucleus	35.36	37.79
EES14116	Sorghum	nucleus	32.5	35.27
GSMUA_Achr7P13700_001	Banana	nucleus	38.57	35.18
EES01839	Sorghum	nucleus	33.57	34.94
KRH17997	Soybean	nucleus, plastid	42.14	33.33
KRH16413	Soybean	nucleus	42.5	32.96
EER99264	Sorghum	nucleus	30.71	32.58
EER92144	Sorghum	nucleus	32.14	30.61
OQU78830	Sorghum	nucleus	30.71	30.5
GSMUA_Achr5P06530_001	Banana	nucleus	38.93	29.07
OQU83016	Sorghum	nucleus	32.5	28.89
OQU86782	Sorghum	nucleus	31.79	24.65
EER92385	Sorghum	nucleus	29.29	23.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A1B6Q5J1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010090	GO:GO:0010214	GO:GO:0010468
GO:GO:0016043	GO:GO:0030154	GO:GO:0048354	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KXG33190
ProteinID:KXG33190	ProteinID:KXG33190.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF942	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3003G267400	SUPFAM:SSF46689	UniParc:UPI0003C718D4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:60404186..60405649

Molecular Weight (calculated)

29986.2 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.554

Length

280 amino acids

Sequence
(BLAST)

001: MTRKPAAQQR GVGGAGAMRT TLKRGAWTPE EDELLSRAVA KEGEGRWRTL PRRAGLLRCG KSCRLRWMNY LRPDIKRGPI AADEEDLILR LHRLLGNRWS
101: LIAGRLPGRT DNEIKNYWNS HLSKKLIARG IDPRAHTPLP GAAASLHSHS QSHGADAAAA AAGSADKTPA LPEVEPQFAP PPPPPPPPPA HPTLPSGAGV
201: GGDFATSMMG LGAEGFDGFD DPFCAPDVAA RGDFDLGCPI VDDAAFSSFL DSLMDEERIA DYFGDHKDAD DGENDQGGPY

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.