CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042665_P001	Maize	nucleus	86.25	88.55
GSMUA_AchrUn_...	Banana	nucleus	44.61	80.54
TraesCS3B01G416400.1	Wheat	nucleus	78.07	78.65
TraesCS3A01G384400.1	Wheat	nucleus	78.07	78.65
Os01t0874300-01	Rice	extracellular, nucleus	83.27	78.05
TraesCS3D01G377300.1	Wheat	nucleus	78.44	77.86
HORVU3Hr1G082210.1	Barley	nucleus	78.07	77.78
GSMUA_Achr3P22200_001	Banana	nucleus	60.59	75.12
GSMUA_Achr2P20600_001	Banana	nucleus	46.47	71.43
KXG22070	Sorghum	nucleus	67.29	69.08
GSMUA_Achr5P26000_001	Banana	nucleus	51.3	65.71
GSMUA_Achr6P07260_001	Banana	mitochondrion	46.84	63.32
GSMUA_Achr6P25420_001	Banana	nucleus	55.39	62.87
GSMUA_Achr10P...	Banana	nucleus	49.44	61.29
GSMUA_Achr8P32480_001	Banana	nucleus	45.35	61.0
EES16743	Sorghum	nucleus	47.96	60.0
GSMUA_Achr5P17010_001	Banana	nucleus	53.16	59.34
AT1G35515.1	Thale cress	nucleus	45.35	57.55
Bra000680.1-P	Field mustard	nucleus	45.72	54.91
CDX90721	Canola	nucleus	45.72	54.91
EES14116	Sorghum	nucleus	52.04	54.26
AT4G09460.1	Thale cress	nucleus	47.21	53.81
EER99264	Sorghum	nucleus	52.79	53.79
CDY05057	Canola	nucleus	45.35	53.74
GSMUA_Achr9P08600_001	Banana	nucleus	54.28	53.68
Solyc06g065100.2.1	Tomato	nucleus	52.04	50.18
PGSC0003DMT400080427	Potato	nucleus	51.67	48.77
VIT_07s0130g00040.t01	Wine grape	nucleus	52.42	48.62
KRH54016	Soybean	nucleus	53.9	48.17
KRH63931	Soybean	nucleus	53.16	47.35
GSMUA_Achr6P12930_001	Banana	nucleus	49.44	46.5
OQU78830	Sorghum	nucleus	47.96	45.74
OQU83016	Sorghum	nucleus	52.04	44.44
KXG33190	Sorghum	nucleus	34.94	33.57
EER92144	Sorghum	nucleus	33.46	30.61
OQU86782	Sorghum	nucleus	36.06	26.87
EER92385	Sorghum	nucleus	33.83	25.56

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8061001	UniProt:C5XRB4	EnsemblPlants:EES01839	ProteinID:EES01839
ProteinID:EES01839.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF617	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3003G373000	SUPFAM:SSF46689	UniParc:UPI0001A84F56	RefSeq:XP_002456719.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:68836127..68838298

Molecular Weight (calculated)

29094.8 Da

IEP (calculated)

9.056

GRAVY (calculated)

-0.482

Length

269 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY LRPDLKRGNF TDDDDEIIIK LHALLGNKWS LIAGQLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPQTHRPLS GGAAAGSGLT TSSTAGFPAQ APAPTRPARP VIIIPPNVMF ARPAPSEDGH SSSGGSTDAP RCPDLNLDLD
201: LSVGPPCSPP KTPAAAVTTP TSQQQEMQRA TICLCYHLGV RSGDACSCKT AASPAGFRFL RPLEEGQYI

Best Arabidopsis Sequence Match ( AT4G09460.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL

Arabidopsis Description

MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.