CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	41.13	77.85
GSMUA_Achr2P20600_001	Banana	nucleus	43.97	70.86
EES16743	Sorghum	nucleus	52.48	68.84
GSMUA_Achr6P07260_001	Banana	mitochondrion	43.62	61.81
GSMUA_Achr3P22200_001	Banana	nucleus	45.74	59.45
GSMUA_Achr10P...	Banana	nucleus	44.68	58.06
GSMUA_Achr8P32480_001	Banana	nucleus	41.13	58.0
GSMUA_Achr5P26000_001	Banana	nucleus	42.91	57.62
GSMUA_Achr6P25420_001	Banana	nucleus	45.39	54.01
AT1G35515.1	Thale cress	nucleus	39.01	51.89
GSMUA_Achr5P17010_001	Banana	nucleus	43.97	51.45
CDX90721	Canola	nucleus	40.78	51.34
Bra000680.1-P	Field mustard	nucleus	40.78	51.34
CDY05057	Canola	nucleus	40.78	50.66
GSMUA_Achr9P08600_001	Banana	nucleus	47.87	49.63
KXG22070	Sorghum	nucleus	46.1	49.62
AT4G09460.1	Thale cress	nucleus	41.49	49.58
EER99264	Sorghum	nucleus	46.1	49.24
EES01839	Sorghum	nucleus	45.74	47.96
EES14116	Sorghum	nucleus	43.62	47.67
GSMUA_Achr6P12930_001	Banana	nucleus	46.45	45.8
Solyc06g065100.2.1	Tomato	nucleus	44.33	44.8
VIT_07s0130g00040.t01	Wine grape	nucleus	45.74	44.48
OQU83016	Sorghum	nucleus	49.65	44.44
PGSC0003DMT400080427	Potato	nucleus	43.97	43.51
KRH63931	Soybean	nucleus	46.1	43.05
KRH54016	Soybean	nucleus	45.39	42.52
EER92144	Sorghum	nucleus	32.98	31.63
KXG33190	Sorghum	nucleus	30.5	30.71
OQU86782	Sorghum	nucleus	33.33	26.04
EER92385	Sorghum	nucleus	30.14	23.88

Protein Annotations

EnsemblPlants:OQU78830	EnsemblPlantsGene:SORBI_3008G055700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF741	PFAM:PF00249	PFscan:PS51294	ProteinID:OQU78830	ProteinID:OQU78830.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000B8BA1AF	UniProt:A0A1Z5R536	MapMan:15.5.2.1	:

Description

hypothetical protein

Coordinates

chr8:+:5681341..5683950

Molecular Weight (calculated)

31034.3 Da

IEP (calculated)

8.388

GRAVY (calculated)

-0.720

Length

282 amino acids

Sequence
(BLAST)

001: FLSPPHINLR PLSLYSTLTT NIVTTRQVPA VLRSNDEEDS DKGRSPCCEK AHTNKGAWTK DEDQRLVAYI KAHGEGCWRS LPKAAGLLRC GKSCRLRWIN
101: YLRPDLKRGN FTHEEDELII RFHGLLGNKW SLIAGRLPGR TDNEIKNYWN THIKRNLIAR GIDPKTHRPL GVSTSAAAAS SHRRQDQDHL LSARSSCSPE
201: TSGDDDSASA PYDGGGIDLN LSISPPRQPP SPSPPPTRQE AEATSGEVLG DANGSEVKVD SPAGRLLGHM HDAEISDFRR AL

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.