CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94424	Soybean	nucleus	18.54	71.74
Zm00001d047671_P001	Maize	nucleus	67.98	70.35
Zm00001d028842_P001	Maize	nucleus	64.04	68.06
TraesCS4D01G187100.1	Wheat	nucleus	57.02	58.67
TraesCS4A01G118400.1	Wheat	nucleus	57.02	58.67
TraesCS4B01G186000.1	Wheat	nucleus	56.18	57.8
HORVU4Hr1G054420.3	Barley	nucleus	55.06	57.65
TraesCS1D01G021700.1	Wheat	nucleus	46.63	52.87
TraesCS1B01G005200.1	Wheat	nucleus	47.47	50.9
TraesCS1B01G023400.1	Wheat	nucleus	44.94	49.84
TraesCS1B01G049700.1	Wheat	nucleus	43.82	48.6
TraesCS1A01G021500.1	Wheat	nucleus	45.79	48.37
TraesCS1B01G023500.1	Wheat	nucleus	43.26	47.98
TraesCS1D01G020900.1	Wheat	nucleus	44.66	46.9
GSMUA_AchrUn_...	Banana	nucleus	36.52	40.62
EES16743	Sorghum	nucleus	23.6	39.07
PGSC0003DMT400011167	Potato	nucleus	29.21	38.52
GSMUA_Achr8P10470_001	Banana	nucleus	38.76	37.2
OQU86782	Sorghum	nucleus	36.24	35.73
AT3G62610.1	Thale cress	nucleus	34.27	35.57
KRH31822	Soybean	nucleus	33.71	35.09
Solyc06g009710.2.1	Tomato	nucleus	29.21	35.02
GSMUA_Achr5P21250_001	Banana	nucleus	31.46	34.89
Solyc12g049350.1.1	Tomato	nucleus	28.65	34.81
PGSC0003DMT400018841	Potato	nucleus	28.93	33.99
KRH69237	Soybean	nucleus	35.39	33.96
AT5G49330.1	Thale cress	nucleus	32.58	33.92
EES01839	Sorghum	nucleus	25.56	33.83
Bra037419.1-P	Field mustard	nucleus	32.3	33.53
VIT_07s0005g01210.t01	Wine grape	nucleus	34.55	33.52
EER99264	Sorghum	nucleus	24.44	32.95
EES14116	Sorghum	nucleus	23.88	32.95
KRH37017	Soybean	nucleus	30.9	32.93
KRH11988	Soybean	nucleus	30.34	32.73
Bra036145.1-P	Field mustard	nucleus	31.74	32.56
KXG22070	Sorghum	nucleus	23.88	32.44
Solyc01g079620.2.1	Tomato	nucleus	30.62	32.25
PGSC0003DMT400023322	Potato	nucleus	32.87	32.23
KRG96503	Soybean	nucleus	32.02	32.2
AT2G47460.1	Thale cress	nucleus	33.43	32.08
KRH50769	Soybean	nucleus	30.34	32.05
KRH68241	Soybean	nucleus	31.74	31.48
KRH02323	Soybean	nucleus	30.62	31.14
OQU78830	Sorghum	nucleus	23.88	30.14
Bra000453.1-P	Field mustard	nucleus	31.74	30.05
EER92144	Sorghum	nucleus	24.44	29.59
KXG33190	Sorghum	nucleus	23.03	29.29
VIT_05s0077g01360.t01	Wine grape	nucleus	30.34	28.2
Bra004456.1-P	Field mustard	nucleus	28.65	27.95
OQU83016	Sorghum	nucleus	24.16	27.3
CDY27486	Canola	plastid	5.34	8.05

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8084002	UniProt:C5WMJ0	EnsemblPlants:EER92385	ProteinID:EER92385
ProteinID:EER92385.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb-rel_proteinP_C
InterPro:Myb_dom	PFAM:PF00249	PFAM:PF06640	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF203
InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3001G397900	SUPFAM:SSF46689	UniParc:UPI0001A82B8E	RefSeq:XP_002465387.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:68362757..68367370

Molecular Weight (calculated)

38106.6 Da

IEP (calculated)

5.610

GRAVY (calculated)

-0.860

Length

356 amino acids

Sequence
(BLAST)

001: MGRAPCCDKV GLKRGRWTAE EDQILANYIA EHGEGSWRSL PKNAGLLRCG KSCRLRWINY LRADVKRGNI SKEEEDIIVK LHATLGNRWS LIASHLPGRT
101: DNEIKNHWNS HLSRQIHTYR RKYTAGPDTT ITIDMSKLQS ADKRRGGRTP GRSPRSSASS SKSKKSNKQP DPEPEPESGD AKGASSPATV TIDDDDKRHG
201: GRTPGLSTKS AGSSSKTNSK QTDPEPEPEP ESGDAKGASS PATAATSAAH SAVVDQDPNQ PNSSSGSTAD GPCSEDATGP WVLDPIDLGD LCQAESEIDA
301: LVSIGAGHDS VAEAFHGVGG EAQVDDLFDM DWDGFAAHLW GEPAPEQIDQ SAQLQP

Best Arabidopsis Sequence Match ( AT2G47460.1 )
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S

Arabidopsis Description

MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.