Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G023400.1 | Wheat | nucleus | 94.39 | 94.39 |
| TraesCS1B01G023500.1 | Wheat | nucleus | 89.72 | 89.72 |
| KRG94424 | Soybean | nucleus | 19.94 | 69.57 |
| TraesCS1B01G005200.1 | Wheat | nucleus | 70.09 | 67.77 |
| TraesCS4B01G186000.1 | Wheat | nucleus | 67.6 | 62.72 |
| TraesCS1A01G021500.1 | Wheat | nucleus | 65.73 | 62.61 |
| TraesCS1D01G020900.1 | Wheat | nucleus | 64.8 | 61.36 |
| Zm00001d028842_P001 | Maize | nucleus | 49.84 | 47.76 |
| Zm00001d047671_P001 | Maize | nucleus | 48.91 | 45.64 |
| EER92385 | Sorghum | nucleus | 48.6 | 43.82 |
| TraesCS3B01G515900.1 | Wheat | nucleus | 24.92 | 39.22 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 25.86 | 35.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.89 | 35.0 |
| KRH31822 | Soybean | nucleus | 36.76 | 34.5 |
| TraesCS5B01G330100.1 | Wheat | nucleus | 27.73 | 33.84 |
| AT3G62610.1 | Thale cress | nucleus | 36.14 | 33.82 |
| PGSC0003DMT400011167 | Potato | nucleus | 28.04 | 33.33 |
| Solyc06g009710.2.1 | Tomato | nucleus | 30.84 | 33.33 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 38.32 | 33.15 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 33.02 | 33.02 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 37.69 | 32.97 |
| Bra036145.1-P | Field mustard | nucleus | 35.51 | 32.85 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 25.23 | 32.79 |
| KRH11988 | Soybean | nucleus | 33.33 | 32.42 |
| Solyc12g049350.1.1 | Tomato | nucleus | 29.59 | 32.42 |
| Bra037419.1-P | Field mustard | nucleus | 34.58 | 32.36 |
| KRH37017 | Soybean | nucleus | 33.64 | 32.34 |
| TraesCS7B01G070400.1 | Wheat | nucleus | 25.55 | 32.28 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 26.79 | 32.21 |
| PGSC0003DMT400018841 | Potato | nucleus | 30.22 | 32.01 |
| AT5G49330.1 | Thale cress | nucleus | 33.96 | 31.87 |
| KRH69237 | Soybean | nucleus | 36.76 | 31.81 |
| KRH50769 | Soybean | nucleus | 33.33 | 31.75 |
| KRG96503 | Soybean | nucleus | 34.89 | 31.64 |
| TraesCS4B01G323300.1 | Wheat | nucleus | 23.99 | 31.43 |
| AT2G47460.1 | Thale cress | nucleus | 35.83 | 31.0 |
| KRH68241 | Soybean | nucleus | 34.58 | 30.92 |
| Bra000453.1-P | Field mustard | nucleus | 35.83 | 30.59 |
| KRH02323 | Soybean | nucleus | 33.02 | 30.29 |
| Solyc01g079620.2.1 | Tomato | nucleus | 31.78 | 30.18 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 24.61 | 29.04 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 34.27 | 28.72 |
| PGSC0003DMT400023322 | Potato | nucleus | 32.4 | 28.65 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 22.74 | 26.84 |
| Bra004456.1-P | Field mustard | nucleus | 30.22 | 26.58 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 25.55 | 21.52 |
| CDY27486 | Canola | plastid | 8.72 | 11.86 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G049700.1 | EnsemblPlantsGene:TraesCS1B01G049700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb-rel_proteinP_C | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF203 | PFAM:PF00249 | PFAM:PF06640 | PFscan:PS51294 | SMART:SM00717 |
| SUPFAM:SSF46689 | TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:29401516..29406892
Molecular Weight (calculated)
35648.8 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.581
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKV GLKQGRWTAE EDDLLTKYIA QHGEGSWRSL PKNAGLLRCG KSCRLQWLNY LSDGVKRGNF SKEEDNLIVK LHATLGSRWS VIASYLPGRT
101: DNEIKNYWNA HLSRQIYNFR HVYAAISETT VTIDVDKLSA TTKRRGGKAP RSTTKMQPVP KPTKSKEGSS PVNTISTTSS QAGPDRDQQP INNMTCGVPC
201: SEEAMVMDPV DQNGMVQLME TNCSDDSVNQ IGVFEEESEM EALLLCIDDD MPVSVLTGIE QGGHSPRVED LLDMDWEGFA SHLWDQRSQS DLLQTAEPQA
301: MTGSESDDLE SFVSWLLSDH A
101: DNEIKNYWNA HLSRQIYNFR HVYAAISETT VTIDVDKLSA TTKRRGGKAP RSTTKMQPVP KPTKSKEGSS PVNTISTTSS QAGPDRDQQP INNMTCGVPC
201: SEEAMVMDPV DQNGMVQLME TNCSDDSVNQ IGVFEEESEM EALLLCIDDD MPVSVLTGIE QGGHSPRVED LLDMDWEGFA SHLWDQRSQS DLLQTAEPQA
301: MTGSESDDLE SFVSWLLSDH A
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.