Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G118400.1 | Wheat | nucleus | 98.55 | 98.55 |
| TraesCS4D01G187100.1 | Wheat | nucleus | 98.27 | 98.27 |
| HORVU4Hr1G054420.3 | Barley | nucleus | 90.17 | 91.76 |
| TraesCS1B01G005200.1 | Wheat | nucleus | 65.9 | 68.67 |
| TraesCS1B01G023400.1 | Wheat | nucleus | 63.58 | 68.54 |
| KRG94424 | Soybean | nucleus | 18.21 | 68.48 |
| TraesCS1B01G049700.1 | Wheat | nucleus | 62.72 | 67.6 |
| TraesCS1B01G023500.1 | Wheat | nucleus | 61.27 | 66.04 |
| Zm00001d047671_P001 | Maize | nucleus | 59.25 | 59.59 |
| Zm00001d028842_P001 | Maize | nucleus | 55.2 | 57.01 |
| EER92385 | Sorghum | nucleus | 57.8 | 56.18 |
| TraesCS3B01G515900.1 | Wheat | nucleus | 25.43 | 43.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.73 | 41.88 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 42.49 | 39.62 |
| Solyc06g009710.2.1 | Tomato | nucleus | 32.66 | 38.05 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 25.72 | 37.87 |
| PGSC0003DMT400011167 | Potato | nucleus | 29.48 | 37.78 |
| KRH31822 | Soybean | nucleus | 36.71 | 37.13 |
| AT3G62610.1 | Thale cress | nucleus | 36.42 | 36.73 |
| Solyc12g049350.1.1 | Tomato | nucleus | 30.92 | 36.52 |
| PGSC0003DMT400018841 | Potato | nucleus | 31.79 | 36.3 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 37.86 | 35.69 |
| TraesCS4B01G323300.1 | Wheat | nucleus | 25.14 | 35.51 |
| Bra037419.1-P | Field mustard | nucleus | 34.97 | 35.28 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 25.14 | 35.22 |
| Bra036145.1-P | Field mustard | nucleus | 35.26 | 35.16 |
| TraesCS7B01G070400.1 | Wheat | nucleus | 25.72 | 35.04 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 32.37 | 34.89 |
| AT5G49330.1 | Thale cress | nucleus | 34.39 | 34.8 |
| KRH69237 | Soybean | nucleus | 37.28 | 34.77 |
| Solyc01g079620.2.1 | Tomato | nucleus | 33.81 | 34.62 |
| TraesCS5B01G330100.1 | Wheat | nucleus | 26.3 | 34.6 |
| KRH11988 | Soybean | nucleus | 32.95 | 34.55 |
| AT2G47460.1 | Thale cress | nucleus | 36.99 | 34.5 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 26.59 | 34.46 |
| KRG96503 | Soybean | nucleus | 34.68 | 33.9 |
| KRH37017 | Soybean | nucleus | 32.66 | 33.83 |
| PGSC0003DMT400023322 | Potato | nucleus | 35.26 | 33.61 |
| KRH68241 | Soybean | nucleus | 34.68 | 33.43 |
| Bra000453.1-P | Field mustard | nucleus | 36.13 | 33.24 |
| KRH50769 | Soybean | nucleus | 32.37 | 33.23 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 25.43 | 32.35 |
| KRH02323 | Soybean | nucleus | 32.37 | 32.0 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 23.99 | 30.51 |
| Bra004456.1-P | Field mustard | nucleus | 31.5 | 29.86 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 32.08 | 28.98 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 26.3 | 23.88 |
| CDY27486 | Canola | plastid | 9.54 | 13.98 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G186000.1 | EnsemblPlantsGene:TraesCS4B01G186000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb-rel_proteinP_C | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF203 | PFAM:PF00249 | PFAM:PF06640 | PFscan:PS51294 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | TIGR:cd00167 | MapMan:15.5.2.1 | : | : |
Description
No Description!
Coordinates
chr4B:+:405903050..405907666
Molecular Weight (calculated)
37755.0 Da
IEP (calculated)
5.009
GRAVY (calculated)
-0.595
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKV GLKRGRWTAE EDDILANYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY LRDGVRRGNI SKEEDDLIVK LHATLGNRWS LIASHLPGRT
101: DNEIKNYWNS HLSRQIHTFR RIYTTVSDTA ITVDINKLSA AGKRRGGRTP GQSPRSSTKK KPVPEPITKA KDESSPAGAA SSVSSSPQSD EARSAVVDPD
201: QNQPNNSISV SHTSDGPCSE DGTWPMVMDP VDQTGVLEAN CTVDQQMGLW EVNSSMNQIG IMEDESEMQA LLSSSVTAEN GLVGIDPGGL SQVDHLLDMD
301: WEGFASHLWD QPAQNGLLQP AEPQAATGSE SDELESFVSW LLSDAC
101: DNEIKNYWNS HLSRQIHTFR RIYTTVSDTA ITVDINKLSA AGKRRGGRTP GQSPRSSTKK KPVPEPITKA KDESSPAGAA SSVSSSPQSD EARSAVVDPD
201: QNQPNNSISV SHTSDGPCSE DGTWPMVMDP VDQTGVLEAN CTVDQQMGLW EVNSSMNQIG IMEDESEMQA LLSSSVTAEN GLVGIDPGGL SQVDHLLDMD
301: WEGFASHLWD QPAQNGLLQP AEPQAATGSE SDELESFVSW LLSDAC
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.