Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g065100.2.1 | Tomato | nucleus | 93.68 | 95.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.05 | 78.52 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 43.51 | 70.86 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 44.56 | 63.82 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 47.72 | 62.67 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 43.16 | 61.5 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 44.91 | 60.95 |
| EES16743 | Sorghum | nucleus | 45.26 | 60.0 |
| GSMUA_Achr10P... | Banana | nucleus | 45.61 | 59.91 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 50.88 | 58.7 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 50.18 | 57.89 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 50.18 | 57.89 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 50.53 | 57.37 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 47.37 | 56.96 |
| Os05t0429900-01 | Rice | nucleus | 51.93 | 56.92 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 48.07 | 56.85 |
| Zm00001d041853_P001 | Maize | nucleus | 44.91 | 56.64 |
| PGSC0003DMT400015803 | Potato | nucleus | 49.12 | 55.12 |
| Zm00001d012255_P001 | Maize | nucleus | 48.42 | 54.98 |
| CDX90721 | Canola | nucleus | 42.81 | 54.46 |
| Bra000680.1-P | Field mustard | nucleus | 42.81 | 54.46 |
| AT1G35515.1 | Thale cress | nucleus | 40.35 | 54.25 |
| Zm00001d042665_P001 | Maize | nucleus | 49.82 | 54.2 |
| CDY05057 | Canola | nucleus | 43.16 | 54.19 |
| PGSC0003DMT400034372 | Potato | nucleus | 50.88 | 54.1 |
| TraesCS5A01G111300.1 | Wheat | nucleus | 45.96 | 53.69 |
| Zm00001d038338_P001 | Maize | nucleus | 48.42 | 53.49 |
| AT4G09460.1 | Thale cress | nucleus | 43.86 | 52.97 |
| PGSC0003DMT400078477 | Potato | nucleus | 32.98 | 52.81 |
| KXG22070 | Sorghum | nucleus | 48.42 | 52.67 |
| EES01839 | Sorghum | nucleus | 48.77 | 51.67 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 48.77 | 51.1 |
| Zm00001d010201_P001 | Maize | nucleus | 44.56 | 51.0 |
| TraesCS3A01G384400.1 | Wheat | nucleus | 47.72 | 50.94 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 47.37 | 50.56 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 46.67 | 50.38 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 51.23 | 50.34 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 47.72 | 50.18 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 47.37 | 50.0 |
| Os01t0874300-01 | Rice | extracellular, nucleus | 49.82 | 49.48 |
| KRH54016 | Soybean | nucleus | 51.93 | 49.17 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 46.67 | 48.9 |
| Zm00001d004744_P001 | Maize | nucleus | 47.02 | 48.73 |
| KRH63931 | Soybean | nucleus | 51.58 | 48.68 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 48.77 | 48.26 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 48.77 | 48.1 |
| Os11t0180900-00 | Rice | nucleus | 49.47 | 47.8 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 47.72 | 47.55 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 42.81 | 46.92 |
| Zm00001d053060_P001 | Maize | nucleus | 47.02 | 46.53 |
| GSMUA_Achr10P... | Banana | nucleus | 45.96 | 46.13 |
| PGSC0003DMT400085829 | Potato | nucleus | 29.12 | 44.86 |
| OQU78830 | Sorghum | nucleus | 43.51 | 43.97 |
| OQU83016 | Sorghum | nucleus | 48.42 | 43.81 |
| TraesCS5D01G128200.2 | Wheat | nucleus | 46.67 | 43.46 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 49.47 | 38.63 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 48.77 | 36.48 |
| PGSC0003DMT400031607 | Potato | nucleus | 31.58 | 32.97 |
| PGSC0003DMT400079416 | Potato | nucleus | 24.56 | 32.56 |
| PGSC0003DMT400011167 | Potato | nucleus | 29.82 | 31.48 |
| PGSC0003DMT400014983 | Potato | nucleus | 34.04 | 30.03 |
| PGSC0003DMT400018841 | Potato | nucleus | 28.77 | 27.06 |
| PGSC0003DMT400023322 | Potato | nucleus | 31.23 | 24.52 |
| PGSC0003DMT400060236 | Potato | nucleus | 31.23 | 19.1 |
| PGSC0003DMT400030322 | Potato | nucleus | 0.35 | 0.61 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102595353 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1D3I0 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400031317 | PGSC:PGSC0003DMG400031317 | EnsemblPlants:PGSC0003DMT400080427 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000296C30F | RefSeq:XP_006356500.1 | SEG:seg |
Description
Myb-like transcription factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400031317]
Coordinates
chr6:-:46955194..46957388
Molecular Weight (calculated)
31847.0 Da
IEP (calculated)
9.009
GRAVY (calculated)
-0.533
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGCWRSL PKAAGLSRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT
101: DNEIKNYWNT HIKRKLISRG IDPQTHRPLN ATATNSHTTT ITTAVTTTTT TTTKNINMDF TNNVDQKQPN IMIAMSSSYD ETKCNSGTTE ETKPLEIIIP
201: KIPSQVMINL ELSIGLPLHS DHISSPESTA SYNFLTTVAP RPTVAVPVAE TVAKTVCLCW QIGYQGGGGQ WCGKCKNTNG FYRYC
101: DNEIKNYWNT HIKRKLISRG IDPQTHRPLN ATATNSHTTT ITTAVTTTTT TTTKNINMDF TNNVDQKQPN IMIAMSSSYD ETKCNSGTTE ETKPLEIIIP
201: KIPSQVMINL ELSIGLPLHS DHISSPESTA SYNFLTTVAP RPTVAVPVAE TVAKTVCLCW QIGYQGGGGQ WCGKCKNTNG FYRYC
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
Arabidopsis Description
MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.