Factsheet for TraesCS5A01G111300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G119300.1	Wheat	nucleus	95.08	85.29
HORVU5Hr1G036900.1	Barley	nucleus	89.75	82.95
GSMUA_AchrUn_...	Banana	nucleus	48.77	79.87
TraesCS5D01G128200.2	Wheat	nucleus	96.31	76.8
GSMUA_Achr2P20600_001	Banana	nucleus	54.1	75.43
GSMUA_Achr5P26000_001	Banana	nucleus	53.69	62.38
GSMUA_Achr6P07260_001	Banana	mitochondrion	49.59	60.8
GSMUA_Achr3P22200_001	Banana	nucleus	52.46	58.99
GSMUA_Achr8P32480_001	Banana	nucleus	47.54	58.0
GSMUA_Achr10P...	Banana	nucleus	50.41	56.68
GSMUA_Achr6P25420_001	Banana	nucleus	54.51	56.12
TraesCS1A01G268800.1	Wheat	nucleus	55.74	55.06
TraesCS7A01G272100.1	Wheat	nucleus	52.46	53.33
CDX90721	Canola	nucleus	48.36	52.68
Bra000680.1-P	Field mustard	nucleus	48.36	52.68
AT1G35515.1	Thale cress	nucleus	45.49	52.36
CDY05057	Canola	nucleus	47.95	51.54
GSMUA_Achr5P17010_001	Banana	nucleus	50.82	51.45
TraesCS3A01G384400.1	Wheat	nucleus	55.33	50.56
AT4G09460.1	Thale cress	nucleus	47.95	49.58
GSMUA_Achr9P08600_001	Banana	nucleus	54.92	49.26
TraesCS5A01G329900.1	Wheat	nucleus	54.1	49.25
TraesCS4A01G217800.1	Wheat	nucleus	57.38	48.61
Solyc06g065100.2.1	Tomato	nucleus	54.1	47.31
PGSC0003DMT400080427	Potato	nucleus	53.69	45.96
VIT_07s0130g00040.t01	Wine grape	nucleus	54.51	45.86
GSMUA_Achr6P12930_001	Banana	nucleus	52.46	44.76
KRH54016	Soybean	nucleus	53.28	43.19
KRH63931	Soybean	nucleus	53.28	43.05
TraesCS5A01G495500.1	Wheat	nucleus	33.2	33.47
TraesCS3A01G257800.1	Wheat	nucleus	35.25	32.45
TraesCS7A01G165700.1	Wheat	nucleus	34.84	32.44
TraesCS1A01G021500.1	Wheat	nucleus	36.48	26.41
TraesCS4A01G118400.1	Wheat	nucleus	36.07	25.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF951	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS5A01G111300	EnsemblPlants:TraesCS5A01G111300.1
TIGR:cd00167	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:214166404..214167365

Molecular Weight (calculated)

26558.6 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.549

Length

244 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLIAHIK DHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF SDEEDELIIK LHEFLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HVKRKLLARG VDPQTHRPLN AGTTAVQGMH TPSSPVVASG ASPHHLAGGS SCSPDASGHS SDADDSVSLP PSLAGNLGVG MIDLNLSISP
201: PYQPPLSRKA DGVLRTGYSE RQKICLCLNR LGLHGGEGCS CEIR

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.