Factsheet for TraesCS5A01G495500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G323300.1	Wheat	nucleus	90.5	89.39
TraesCS4D01G319800.1	Wheat	nucleus	81.41	87.95
TraesCS4D01G319700.1	Wheat	nucleus	85.54	85.19
HORVU4Hr1G082610.1	Barley	nucleus	84.3	77.86
TraesCS7A01G165700.1	Wheat	nucleus	69.83	64.5
Zm00001d037118_P001	Maize	nucleus	63.22	56.04
Zm00001d044975_P001	Maize	nucleus	61.57	54.78
GSMUA_Achr9P27380_001	Banana	nucleus	46.69	43.46
GSMUA_Achr6P04400_001	Banana	nucleus	49.17	43.27
VIT_11s0016g01310.t01	Wine grape	nucleus	38.43	42.27
TraesCS7A01G272100.1	Wheat	nucleus	34.71	35.0
KRH19274	Soybean	nucleus	43.8	34.87
KRH02634	Soybean	nucleus	44.21	34.85
VIT_11s0016g01320.t01	Wine grape	nucleus	40.5	34.51
CDX84119	Canola	nucleus	37.19	34.48
KRH06177	Soybean	nucleus	40.5	34.39
Bra035532.1-P	Field mustard	nucleus	36.36	33.85
CDY49363	Canola	nucleus	36.36	33.72
KRH47594	Soybean	nucleus	37.6	33.21
TraesCS5A01G111300.1	Wheat	nucleus	33.47	33.2
TraesCS1A01G268800.1	Wheat	nucleus	33.06	32.39
TraesCS5A01G329900.1	Wheat	nucleus	33.88	30.6
TraesCS3A01G384400.1	Wheat	nucleus	33.47	30.34
TraesCS3A01G257800.1	Wheat	nucleus	33.06	30.19
AT5G35550.2	Thale cress	nucleus	31.41	29.12
TraesCS4A01G217800.1	Wheat	nucleus	33.88	28.47
Solyc12g049300.1.1	Tomato	nucleus	40.91	28.12
TraesCS4A01G118400.1	Wheat	nucleus	35.95	25.14
TraesCS1A01G021500.1	Wheat	nucleus	34.3	24.63
PGSC0003DMT400030322	Potato	nucleus	2.48	3.66

Protein Annotations

EnsemblPlants:TraesCS5A01G495500.1	EnsemblPlantsGene:TraesCS5A01G495500	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF459	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:663379119..663379971

Molecular Weight (calculated)

25678.2 Da

IEP (calculated)

9.133

GRAVY (calculated)

-0.393

Length

242 amino acids

Sequence
(BLAST)

001: MRRACSAKEG VKRGAWTSKE DETLASYIKA HGEGRWKEVP LKAGLRRCGK SCRLRWLNYL RPSIKRGNIS DDEEELIVRL HRLLGNRWSL IAGRLPGRTD
101: NEIKNYWNST LGRKALPERA ATRVVATPCA SASSGSSTGA STAGLSSNCG AGTSAKAAGL LSSASVWVPK PVRCTGGLFL SGDAPLPAPV TQTRAVGGDG
201: DECSGSSLAA SSGGGDWMDD VRALASFLES DEDWVNSLHM AD

Best Arabidopsis Sequence Match ( AT2G16720.1 )
(BLAST)

001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK

Arabidopsis Description

MYB7Transcription factor MYB7 [Source:UniProtKB/Swiss-Prot;Acc:Q42379]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.