Factsheet for TraesCS4D01G319800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G495500.1	Wheat	nucleus	87.95	81.41
TraesCS4D01G319700.1	Wheat	nucleus	87.95	81.07
HORVU4Hr1G082610.1	Barley	nucleus	91.07	77.86
TraesCS4B01G323300.1	Wheat	nucleus	84.82	77.55
TraesCS7D01G166500.1	Wheat	nucleus	75.45	67.06
TraesCS4D01G224500.1	Wheat	nucleus	66.96	64.94
Zm00001d044975_P001	Maize	nucleus	66.52	54.78
Zm00001d037118_P001	Maize	nucleus	65.18	53.48
GSMUA_Achr6P04400_001	Banana	nucleus	52.68	42.91
GSMUA_Achr9P27380_001	Banana	nucleus	48.66	41.92
VIT_11s0016g01310.t01	Wine grape	nucleus	41.07	41.82
TraesCS3D01G468400.1	Wheat	nucleus	46.88	39.62
TraesCS7D01G272400.1	Wheat	nucleus	37.5	35.9
VIT_11s0016g01320.t01	Wine grape	nucleus	43.75	34.51
CDX84119	Canola	nucleus	40.18	34.48
KRH06177	Soybean	nucleus	43.75	34.39
KRH19274	Soybean	nucleus	46.43	34.21
KRH02634	Soybean	nucleus	46.88	34.2
Bra035532.1-P	Field mustard	nucleus	39.29	33.85
CDY49363	Canola	nucleus	39.29	33.72
KRH47594	Soybean	nucleus	40.18	32.85
TraesCS1D01G268900.1	Wheat	nucleus	36.16	32.79
TraesCS5D01G335700.1	Wheat	nucleus	37.5	31.58
TraesCS3D01G257800.1	Wheat	nucleus	37.5	31.0
TraesCS3D01G377300.1	Wheat	nucleus	36.16	29.89
AT5G35550.2	Thale cress	nucleus	34.38	29.5
Solyc12g049300.1.1	Tomato	nucleus	43.3	27.56
TraesCS4D01G092900.1	Wheat	nucleus	35.27	27.34
TraesCS1D01G021700.1	Wheat	nucleus	37.5	26.75
TraesCS5D01G128200.2	Wheat	nucleus	36.16	26.47
TraesCS4D01G187100.1	Wheat	nucleus	39.29	25.43
TraesCS1D01G020900.1	Wheat	nucleus	36.16	23.89
PGSC0003DMT400030322	Potato	nucleus	2.23	3.05

Protein Annotations

EnsemblPlants:TraesCS4D01G319800.1	EnsemblPlantsGene:TraesCS4D01G319800	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF459	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:483430577..483431367

Molecular Weight (calculated)

24192.5 Da

IEP (calculated)

9.857

GRAVY (calculated)

-0.517

Length

224 amino acids

Sequence
(BLAST)

001: MGRRAWSAKE GVKRGAWTSK EDETLASYVK AHGEGRWKQV PLKAGLRRCG KSCRLRWLNY LRPSIKRGNI SDDEEELIVR LHRLLGNRWS LIAGRLPGRT
101: DNEIKNYWNS TLGRKALPER SATRMVSTPC ASPGSVSSNS GAATSSNAAT PPLSAAVWAP KPVRCTGGLF FHGDARAVGG DGDECSGSSL VASSGGGDWM
201: DDVRALASFL ESDDDWVNSL QMAG

Best Arabidopsis Sequence Match ( AT5G35550.1 )
(BLAST)

001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC

Arabidopsis Description

TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.