Factsheet for Solyc12g049300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030322	Potato	nucleus	42.33	90.85
Solyc12g096200.1.1	Tomato	nucleus	23.01	64.8
TraesCS3B01G515900.1	Wheat	nucleus	29.55	50.98
Solyc05g008250.1.1	Tomato	nucleus	25.28	50.0
VIT_04s0008g01800.t01	Wine grape	nucleus	34.66	46.04
HORVU3Hr1G100500.1	Barley	nucleus	32.95	45.49
KRH47594	Soybean	nucleus	34.66	44.53
TraesCS4D01G319800.1	Wheat	nucleus	27.56	43.3
KRH06177	Soybean	nucleus	34.94	43.16
VIT_13s0084g00530.t01	Wine grape	nucleus	32.1	42.97
VIT_04s0008g01840.t01	Wine grape	nucleus	27.56	42.92
TraesCS3D01G468400.1	Wheat	nucleus	32.1	42.64
KRH19274	Soybean	nucleus	36.36	42.11
KRH02634	Soybean	nucleus	36.36	41.69
TraesCS4D01G319700.1	Wheat	nucleus	28.69	41.56
VIT_04s0008g01820.t01	Wine grape	nucleus	34.66	41.08
TraesCS5A01G495500.1	Wheat	nucleus	28.12	40.91
VIT_11s0016g01300.t01	Wine grape	nucleus	34.66	40.53
VIT_04s0008g01810.t01	Wine grape	nucleus	31.53	40.22
CDX84119	Canola	nucleus	29.55	39.85
Bra035532.1-P	Field mustard	nucleus	29.26	39.62
TraesCS4B01G323300.1	Wheat	nucleus	27.56	39.59
CDY49363	Canola	nucleus	29.26	39.46
EER92144	Sorghum	nucleus	32.67	39.12
TraesCS7B01G070400.1	Wheat	nucleus	28.12	38.98
TraesCS4D01G224500.1	Wheat	nucleus	25.57	38.96
TraesCS7D01G166500.1	Wheat	nucleus	27.84	38.89
Zm00001d037118_P001	Maize	nucleus	29.83	38.46
Solyc01g111500.2.1	Tomato	nucleus	26.99	37.7
VIT_09s0002g01400.t01	Wine grape	nucleus	36.65	37.61
Zm00001d044975_P001	Maize	nucleus	28.98	37.5
TraesCS7A01G165700.1	Wheat	nucleus	27.84	37.4
Solyc07g008010.2.1	Tomato	nucleus	22.16	36.97
HORVU7Hr1G034630.1	Barley	nucleus	27.84	36.57
HORVU4Hr1G082610.1	Barley	nucleus	26.99	36.26
GSMUA_Achr7P18560_001	Banana	nucleus	27.27	35.69
GSMUA_Achr7P18550_001	Banana	nucleus	26.7	35.61
HORVU4Hr1G063760.1	Barley	nucleus	23.01	35.06
Solyc10g055410.1.1	Tomato	nucleus	26.7	34.43
AT5G35550.2	Thale cress	nucleus	25.28	34.1
Solyc08g082890.2.1	Tomato	nucleus	26.7	33.22
VIT_04s0008g01830.t01	Wine grape	nucleus	26.14	32.62
Solyc06g065100.2.1	Tomato	nucleus	24.43	30.82
Solyc08g008480.2.1	Tomato	nucleus	27.27	30.09
Solyc08g005870.1.1	Tomato	nucleus	23.86	29.68
Solyc01g005660.1.1	Tomato	nucleus, plastid	25.85	29.55
Solyc12g049350.1.1	Tomato	nucleus	24.15	29.01
Solyc06g009710.2.1	Tomato	nucleus	23.86	28.28
GSMUA_Achr6P02530_001	Banana	nucleus	25.85	25.21
Solyc01g079620.2.1	Tomato	nucleus	23.01	23.96

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4DFL0	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF459
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc12g049300.1	EnsemblPlants:Solyc12g049300.1.1	UniParc:UPI00027699E8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:37092802..37094581

Molecular Weight (calculated)

39887.5 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.773

Length

352 amino acids

Sequence
(BLAST)

001: MGRKPCCSKE GLNKGAWTPL EDKILMDYIK VHGEGKWRNL PKGAGLKRCG KSCRLRWLNY LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT NIGRRLQEGT RSGQPNRVIS SNRQRHRSIH TKSTIPNDQE HASPQDSQYL LTDIRHGGSL SSSSPCLVVH TKAIRCTKVF MSPTTSNSVV
201: DTHETTEHDN DHKVMIEENV TTNILTPSSS SFSISSLSEQ EPQQQQQQPV SESYSPTNLS FELENYNFSF MFGFDVDDPF LAELLNAPDL RDQILENSTT
301: TSSTIVNGDI NNSNKNERQR SYFPSSSSQI AIFSEETQHN DLELWINGFS SC

Best Arabidopsis Sequence Match ( AT5G35550.1 )
(BLAST)

001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC

Arabidopsis Description

TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.