Factsheet for Solyc05g008250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078477	Potato	nucleus	93.82	93.82
Solyc12g096200.1.1	Tomato	nucleus	44.94	64.0
VIT_17s0000g02650.t01	Wine grape	nucleus	58.99	63.64
GSMUA_AchrUn_...	Banana	nucleus	61.24	56.19
VIT_01s0011g04760.t01	Wine grape	nucleus	69.1	54.67
KRG89277	Soybean	nucleus	66.29	52.91
KRH50345	Soybean	nucleus	66.85	51.52
GSMUA_Achr10P...	Banana	nucleus	59.55	51.46
KRH15114	Soybean	nucleus	53.37	50.8
VIT_14s0006g01620.t01	Wine grape	nucleus	64.04	50.0
KRH73023	Soybean	nucleus	61.24	49.55
VIT_17s0000g02660.t01	Wine grape	nucleus	62.92	48.91
GSMUA_Achr3P21000_001	Banana	nucleus	62.92	44.09
GSMUA_Achr6P09620_001	Banana	nucleus	49.44	44.0
Solyc01g111500.2.1	Tomato	nucleus	55.62	39.29
Solyc10g055410.1.1	Tomato	nucleus	56.18	36.63
Solyc06g065100.2.1	Tomato	nucleus	53.93	34.41
Solyc07g008010.2.1	Tomato	nucleus	38.76	32.7
Solyc08g082890.2.1	Tomato	nucleus	51.12	32.16
Solyc08g005870.1.1	Tomato	nucleus	46.63	29.33
Solyc08g008480.2.1	Tomato	nucleus	51.12	28.53
Solyc01g005660.1.1	Tomato	nucleus, plastid	47.75	27.6
Solyc06g009710.2.1	Tomato	nucleus	43.26	25.93
Solyc12g049300.1.1	Tomato	nucleus	50.0	25.28
Solyc12g049350.1.1	Tomato	nucleus	41.57	25.26
Solyc01g079620.2.1	Tomato	nucleus	44.38	23.37

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BWZ9	EMBL:MF197513	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF507	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc05g008250.1	EnsemblPlants:Solyc05g008250.1.1
UniParc:UPI0002766291	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:2634996..2636547

Molecular Weight (calculated)

20661.9 Da

IEP (calculated)

9.656

GRAVY (calculated)

-0.762

Length

178 amino acids

Sequence
(BLAST)

001: MRKPCCDNKE EMHKGAWSKQ EDQKLIDYIT KHGEGCWRNL PKAAGLLRCG KSCRLRWMNY LNPNLKRGNF SEDEDDLIIK LHALLGNRWS LIAGRLPGRT
101: DNEVKNYWNS HLTRKLIKMG IDPKNHRLSH YLHIKRLELL QENNTRLENV GVISDATSSY ANKDQQITSS LLDLNLIP

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.