Factsheet for Solyc08g082890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031607	Potato	nucleus	89.75	93.04
Solyc12g096200.1.1	Tomato	nucleus	33.22	75.2
Solyc08g008480.2.1	Tomato	nucleus	58.3	51.72
Solyc05g008250.1.1	Tomato	nucleus	32.16	51.12
Solyc08g005870.1.1	Tomato	nucleus	46.29	46.29
KRG97208	Soybean	nucleus	41.7	41.99
VIT_15s0046g00170.t01	Wine grape	nucleus	39.58	39.16
Solyc01g111500.2.1	Tomato	nucleus	34.63	38.89
KRH68929	Soybean	nucleus	33.22	38.37
Solyc10g055410.1.1	Tomato	nucleus	36.04	37.36
Solyc07g008010.2.1	Tomato	nucleus	26.5	35.55
KRH47884	Soybean	nucleus	36.04	35.17
KRH06443	Soybean	nucleus	35.69	34.47
Solyc06g065100.2.1	Tomato	nucleus	32.16	32.62
Solyc01g005660.1.1	Tomato	nucleus, plastid	32.16	29.55
Solyc06g009710.2.1	Tomato	nucleus	28.98	27.61
Solyc12g049300.1.1	Tomato	nucleus	33.22	26.7
Solyc12g049350.1.1	Tomato	nucleus	27.56	26.62
Solyc01g079620.2.1	Tomato	nucleus	28.98	24.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4CPT5	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF613
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g082890.2	EnsemblPlants:Solyc08g082890.2.1	UniParc:UPI000276CACD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:65545830..65546999

Molecular Weight (calculated)

32669.0 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.918

Length

283 amino acids

Sequence
(BLAST)

001: MGRAPCCAKE GLRKGPWSTK EDLLLTNYIN QYGEGQWRSL PKNAGLLRCG KSCRLRWVNY LKPGIKRGNF SEDEEDLIVR LHSLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT HLTKKLRSTG IEPKPHKNLT KLKEKSRKQT KKEKSRKEVG KKSNDEKLKG QIAQVEKIKV FAPKPIRISC GISRNNSFEN DTLSTTTCSS
201: NSNFEKVDDG KDREKEVKLF PRELDFDELL EGGGFYDEFL MGESCNFSNK VEMNDNMVEK VYEEYLLLLS EIQEDQTEQK FSM

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.