Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g008250.1.1 | Tomato | nucleus | 64.0 | 44.94 |
| Solyc01g111500.2.1 | Tomato | nucleus | 67.2 | 33.33 |
| Solyc08g082890.2.1 | Tomato | nucleus | 75.2 | 33.22 |
| KRG97208 | Soybean | nucleus | 72.0 | 32.03 |
| Solyc08g005870.1.1 | Tomato | nucleus | 72.0 | 31.8 |
| KRH47884 | Soybean | nucleus | 72.8 | 31.38 |
| Solyc07g008010.2.1 | Tomato | nucleus | 52.8 | 31.28 |
| VIT_15s0046g00170.t01 | Wine grape | nucleus | 71.2 | 31.12 |
| KRH06443 | Soybean | nucleus | 72.8 | 31.06 |
| Solyc10g055410.1.1 | Tomato | nucleus | 67.2 | 30.77 |
| Solyc06g065100.2.1 | Tomato | nucleus | 64.8 | 29.03 |
| Solyc08g008480.2.1 | Tomato | nucleus | 72.8 | 28.53 |
| KRH68929 | Soybean | nucleus | 53.6 | 27.35 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 64.0 | 25.97 |
| Solyc12g049350.1.1 | Tomato | nucleus | 60.0 | 25.6 |
| Solyc06g009710.2.1 | Tomato | nucleus | 60.0 | 25.25 |
| Solyc01g079620.2.1 | Tomato | nucleus | 63.2 | 23.37 |
| Solyc12g049300.1.1 | Tomato | nucleus | 64.8 | 23.01 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| UniProt:K4DH93 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF203 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc12g096200.1 | EnsemblPlants:Solyc12g096200.1.1 | UniParc:UPI0002769BA7 |
Description
No Description!
Coordinates
chr12:-:65220475..65221497
Molecular Weight (calculated)
14200.4 Da
IEP (calculated)
10.264
GRAVY (calculated)
-0.504
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRTPCCSKV GMKKGPWSIE EDMLLTSYIH LHGEGNWRSL PMNAGLLRCS KSCRLRWVNY LRPGIKRGNF SPEEDDLIIP LYSLLGGRWS LIAGRLSGRT
101: DNEIKNHWHT NLLKKLKASG IEPKP
101: DNEIKNHWHT NLLKKLKASG IEPKP
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Arabidopsis Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.