Factsheet for Solyc07g008010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079416	Potato	nucleus	98.1	96.28
Solyc12g096200.1.1	Tomato	nucleus	31.28	52.8
CDY51833	Canola	nucleus	49.29	52.26
Bra029113.1-P	Field mustard	nucleus	47.87	50.75
CDY56151	Canola	nucleus	47.87	50.75
AT5G52600.1	Thale cress	nucleus	48.34	50.75
Bra022602.1-P	Field mustard	nucleus	46.92	50.0
CDY27055	Canola	nucleus	46.92	50.0
CDY65324	Canola	nucleus	46.92	48.77
VIT_11s0016g05660.t01	Wine grape	nucleus	50.24	47.53
VIT_11s0016g05690.t01	Wine grape	nucleus	48.34	45.74
Solyc05g008250.1.1	Tomato	nucleus	32.7	38.76
GSMUA_Achr3P07950_001	Banana	nucleus	36.49	32.35
Solyc01g111500.2.1	Tomato	nucleus	35.55	29.76
GSMUA_Achr3P27700_001	Banana	nucleus	36.02	27.74
Solyc08g082890.2.1	Tomato	nucleus	35.55	26.5
Solyc10g055410.1.1	Tomato	nucleus	34.12	26.37
Solyc06g065100.2.1	Tomato	nucleus	32.7	24.73
Solyc08g008480.2.1	Tomato	nucleus	36.97	24.45
Solyc01g005660.1.1	Tomato	nucleus, plastid	35.55	24.35
Solyc08g005870.1.1	Tomato	nucleus	31.28	23.32
Solyc12g049300.1.1	Tomato	nucleus	36.97	22.16
Solyc06g009710.2.1	Tomato	nucleus	29.86	21.21
Solyc12g049350.1.1	Tomato	nucleus	28.44	20.48
Solyc01g079620.2.1	Tomato	nucleus	30.33	18.93

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010026	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4CBS0	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF662	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc07g008010.2
EnsemblPlants:Solyc07g008010.2.1	UniParc:UPI000276B00D	:	:	:	:

Description

Transcription factor MYB82 [Source:Projected from Arabidopsis thaliana (AT5G52600) UniProtKB/Swiss-Prot;Acc:Q9LTF7]

Coordinates

chr7:-:2710099..2711454

Molecular Weight (calculated)

24523.5 Da

IEP (calculated)

9.480

GRAVY (calculated)

-0.837

Length

211 amino acids

Sequence
(BLAST)

001: MKDKDVKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLMRSGKS CRLRWKNYLR PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN
101: EVKNFWNTHL NNKRSCRGKK KHVKSKEANT QSTQGKMQEY PAETVSNQEV ATKTALDSWI EEMQDLLSPP TMNNMPFLED EPFIPILDDI VLLEAFTSTG
201: KETWNEIQPF L

Best Arabidopsis Sequence Match ( AT5G52600.1 )
(BLAST)

001: MECKREEGKS YVKRGLWKPE EDMILKSYVE THGEGNWADI SRRSGLKRGG KSCRLRWKNY LRPNIKRGSM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT
101: DNEVKNYWNT HLNKKPNSRR QNAPESIVGA TPFTDKPVMS TELRRSHGEG GEEESNTWME ETNHFGYDVH VGSPLPLISH YPDNTLVFDP CFSFTDFFPL
201: L

Arabidopsis Description

MYB82Transcription factor MYB82 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.