Factsheet for PGSC0003DMT400079416

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008010.2.1	Tomato	nucleus	96.28	98.1
CDY51833	Canola	nucleus	49.3	53.27
Bra029113.1-P	Field mustard	nucleus	47.91	51.76
CDY56151	Canola	nucleus	47.91	51.76
AT5G52600.1	Thale cress	nucleus	48.37	51.74
Bra022602.1-P	Field mustard	nucleus	46.98	51.01
CDY27055	Canola	nucleus	46.98	51.01
CDY65324	Canola	nucleus	47.44	50.25
VIT_11s0016g05660.t01	Wine grape	nucleus	50.23	48.43
VIT_11s0016g05690.t01	Wine grape	nucleus	48.37	46.64
PGSC0003DMT400078477	Potato	nucleus	32.09	38.76
PGSC0003DMT400085829	Potato	nucleus	30.23	35.14
GSMUA_Achr3P07950_001	Banana	nucleus	35.81	32.35
PGSC0003DMT400015803	Potato	nucleus	34.88	29.53
GSMUA_Achr3P27700_001	Banana	nucleus	35.35	27.74
PGSC0003DMT400034372	Potato	nucleus	34.42	27.61
PGSC0003DMT400031607	Potato	nucleus	34.42	27.11
PGSC0003DMT400080427	Potato	nucleus	32.56	24.56
PGSC0003DMT400014983	Potato	nucleus	35.35	23.53
PGSC0003DMT400011167	Potato	nucleus	28.37	22.59
PGSC0003DMT400018841	Potato	nucleus	28.37	20.13
PGSC0003DMT400023322	Potato	nucleus	30.7	18.18
PGSC0003DMT400060236	Potato	nucleus	30.7	14.16
PGSC0003DMT400030322	Potato	nucleus	0.93	1.22

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102584003	MapMan:15.5.2.1	ProteinID:AAG08962	ProteinID:AAG08962.1	EMBL:AF122054
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010026	GO:GO:0030154	GO:GO:0045893	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	RefSeq:NP_001275316.1	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400030913	PGSC:PGSC0003DMG400030913	EnsemblPlants:PGSC0003DMT400079416
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF662	UniProt:Q9FZ12	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00000A27A1	:	:	:	:

Description

Tuber-specific and sucrose-responsive element binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030913]

Coordinates

chr7:-:4228845..4233200

Molecular Weight (calculated)

25003.1 Da

IEP (calculated)

9.231

GRAVY (calculated)

-0.769

Length

215 amino acids

Sequence
(BLAST)

001: MKDKEVKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLMRSGKS CRLRWKNYLR PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN
101: EVKNFWNTHL NNKRSCRGKK KHVKSKEANT QSTQGKMQEY PAETVSNQEV ATKTVLDSWI EEMQDFNCSL LSPLTMNNMP FLEDEPFIPI LDDIVLLEAF
201: TSTGKEAWNE IQPFL

Best Arabidopsis Sequence Match ( AT5G52600.1 )
(BLAST)

001: MECKREEGKS YVKRGLWKPE EDMILKSYVE THGEGNWADI SRRSGLKRGG KSCRLRWKNY LRPNIKRGSM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT
101: DNEVKNYWNT HLNKKPNSRR QNAPESIVGA TPFTDKPVMS TELRRSHGEG GEEESNTWME ETNHFGYDVH VGSPLPLISH YPDNTLVFDP CFSFTDFFPL
201: L

Arabidopsis Description

MYB82Transcription factor MYB82 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.