Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078477 | Potato | nucleus | 17.38 | 45.51 |
| PGSC0003DMT400085829 | Potato | nucleus | 16.95 | 42.7 |
| PGSC0003DMT400015803 | Potato | nucleus | 19.53 | 35.83 |
| PGSC0003DMT400034372 | Potato | nucleus | 20.39 | 35.45 |
| PGSC0003DMT400011167 | Potato | nucleus | 18.67 | 32.22 |
| PGSC0003DMT400080427 | Potato | nucleus | 19.1 | 31.23 |
| PGSC0003DMT400079416 | Potato | nucleus | 14.16 | 30.7 |
| PGSC0003DMT400031607 | Potato | nucleus | 17.6 | 30.04 |
| PGSC0003DMT400018841 | Potato | nucleus | 18.03 | 27.72 |
| PGSC0003DMT400023322 | Potato | nucleus | 20.6 | 26.45 |
| PGSC0003DMT400014983 | Potato | nucleus | 17.6 | 25.39 |
| PGSC0003DMT400030322 | Potato | nucleus | 3.0 | 8.54 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400060236 | EnsemblPlantsGene:PGSC0003DMG401023433 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF595 | PFAM:PF00249 | PFscan:PS51294 | PGSC:PGSC0003DMG401023433 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000295FD7B | UniProt:M1C5G2 | MapMan:15.5.2.1 | : | : |
Description
MYB-like DNA-binding domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG401023433]
Coordinates
chr5:-:50135192..50138300
Molecular Weight (calculated)
51868.1 Da
IEP (calculated)
4.309
GRAVY (calculated)
-0.589
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAPCCENF GLKKGKWTDE EDELLVKYIQ VNGEGSWRSL PKNAGLSRCG KSCRLRWTNY LRPNLKRGKF TAEEDEIIVK LHSTLGNRWS SIAQLLSGRT
101: DNDIKNYWNS NLRRRIYTFR NLKELIKTTA NVPKIVVDGS CGESSIKQGT TIGSEGGSIE SFLPEKNIVD DIGSPRKNNS SLCDDSRGDT TLSEGRSIES
201: LLPEDNIVVD RGSTRKSDSS CLGSKDEAMW SEGNSIESLL PKNYNVDIGS LRKSNSLCPR DKDDATWLGV GLIESLLSED IETNSSCSRG MSNATWSEEN
301: SIESLLVENY VVDIGSNQET NFSCLEGKDG ATWSEEGVSF ESLLLENIET NSACHNWFEE SSIESFLLES YIVDIVCNRE TNSSYLEDPA MWSEEGSSIE
401: YPLMENYSVD QGSNRETNFS CLRGKDGAMS SEEGSSIESL LTKNYIDDLE FLTQSSLDEI KGLAMQ
101: DNDIKNYWNS NLRRRIYTFR NLKELIKTTA NVPKIVVDGS CGESSIKQGT TIGSEGGSIE SFLPEKNIVD DIGSPRKNNS SLCDDSRGDT TLSEGRSIES
201: LLPEDNIVVD RGSTRKSDSS CLGSKDEAMW SEGNSIESLL PKNYNVDIGS LRKSNSLCPR DKDDATWLGV GLIESLLSED IETNSSCSRG MSNATWSEEN
301: SIESLLVENY VVDIGSNQET NFSCLEGKDG ATWSEEGVSF ESLLLENIET NSACHNWFEE SSIESFLLES YIVDIVCNRE TNSSYLEDPA MWSEEGSSIE
401: YPLMENYSVD QGSNRETNFS CLRGKDGAMS SEEGSSIESL LTKNYIDDLE FLTQSSLDEI KGLAMQ
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.