Factsheet for PGSC0003DMT400030322

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g049300.1.1	Tomato	nucleus	90.85	42.33
KRH19274	Soybean	nucleus	11.59	6.25
KRH02634	Soybean	nucleus	11.59	6.19
VIT_13s0084g00530.t01	Wine grape	nucleus	7.93	4.94
VIT_04s0008g01810.t01	Wine grape	nucleus	7.93	4.71
KRH06177	Soybean	nucleus	7.32	4.21
EER92144	Sorghum	nucleus	7.32	4.08
VIT_09s0002g01400.t01	Wine grape	nucleus	8.54	4.08
AT5G35550.2	Thale cress	nucleus	6.1	3.83
CDX84119	Canola	nucleus	6.1	3.83
VIT_04s0008g01800.t01	Wine grape	nucleus	6.1	3.77
VIT_11s0016g01300.t01	Wine grape	nucleus	6.71	3.65
Bra035532.1-P	Field mustard	nucleus	5.49	3.46
CDY49363	Canola	nucleus	5.49	3.45
KRH47594	Soybean	nucleus	5.49	3.28
HORVU3Hr1G100500.1	Barley	nucleus	4.88	3.14
VIT_04s0008g01840.t01	Wine grape	nucleus	4.27	3.1
VIT_04s0008g01820.t01	Wine grape	nucleus	5.49	3.03
TraesCS3D01G468400.1	Wheat	nucleus	4.88	3.02
PGSC0003DMT400060236	Potato	nucleus	8.54	3.0
TraesCS4D01G319700.1	Wheat	nucleus	4.27	2.88
TraesCS5A01G495500.1	Wheat	nucleus	3.66	2.48
PGSC0003DMT400015803	Potato	nucleus	3.66	2.36
HORVU4Hr1G082610.1	Barley	nucleus	3.66	2.29
PGSC0003DMT400078477	Potato	nucleus	2.44	2.25
PGSC0003DMT400034372	Potato	nucleus	3.66	2.24
TraesCS4D01G319800.1	Wheat	nucleus	3.05	2.23
Zm00001d037118_P001	Maize	nucleus	3.66	2.2
PGSC0003DMT400031607	Potato	nucleus	3.66	2.2
HORVU4Hr1G063760.1	Barley	nucleus	3.05	2.16
TraesCS7D01G166500.1	Wheat	nucleus	3.05	1.98
TraesCS3B01G515900.1	Wheat	nucleus	2.44	1.96
HORVU7Hr1G034630.1	Barley	nucleus	3.05	1.87
Zm00001d044975_P001	Maize	nucleus	3.05	1.84
VIT_04s0008g01830.t01	Wine grape	nucleus	3.05	1.77
TraesCS4B01G323300.1	Wheat	nucleus	2.44	1.63
TraesCS7B01G070400.1	Wheat	nucleus	2.44	1.57
PGSC0003DMT400014983	Potato	nucleus	3.05	1.55
GSMUA_Achr7P18550_001	Banana	nucleus	2.44	1.52
PGSC0003DMT400011167	Potato	nucleus	2.44	1.48
TraesCS4D01G224500.1	Wheat	nucleus	1.83	1.3
TraesCS7A01G165700.1	Wheat	nucleus	1.83	1.15
GSMUA_Achr6P02530_001	Banana	nucleus	2.44	1.11
PGSC0003DMT400018841	Potato	nucleus	1.83	0.99
PGSC0003DMT400079416	Potato	nucleus	1.22	0.93
GSMUA_Achr7P18560_001	Banana	nucleus	1.22	0.74
PGSC0003DMT400023322	Potato	nucleus	1.22	0.55
PGSC0003DMT400085829	Potato	nucleus	0.61	0.54
PGSC0003DMT400080427	Potato	nucleus	0.61	0.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400030322	EnsemblPlantsGene:PGSC0003DMG400011605	PGSC:PGSC0003DMG400011605	SEG:seg	UniParc:UPI000294E200	UniProt:M1AU26
MapMan:35.2	:	:	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011605]

Coordinates

chr12:+:52588650..52589728

Molecular Weight (calculated)

18289.4 Da

IEP (calculated)

3.723

GRAVY (calculated)

-0.710

Length

164 amino acids

Sequence
(BLAST)

001: MSPTTSNSVV DPHETTENDN NHKVMTEENV TTNIVTSSSS SFSISSLSEQ VPQQQQPVSE SYSPTNLSVE TENYNFNFMF GFDVDDPFLA ELLNAPDLRD
101: QILENSTTSS TIVNGDQELG DINNSNKNER QRSYFPSSSS QIAIFSEETQ HNDLELWING FSSC

Best Arabidopsis Sequence Match ( AT5G04930.1 )
(BLAST)

0001: MDPRKSIDKP PHHDPILGVS SRWSVSSKDN KEVTFGDLGS KRIRHGSAGA DSEMLSMSQK EIKDEDARLI YINDPDRTNE RFEFTGNSIK TAKYSVFTFL
0101: PRNLFEQFHR VAYIYFLVIA VLNQLPQLAV FGRGASIMPL AFVLLVSAIK DAYEDFRRHR SDRVENNRLA LVFEDHQFRE KKWKHIRVGE VIKVQSNQTL
0201: PCDMVLLATS DPTGVVYVQT TNLDGESNLK TRYAKQETLL KAADMESFNG FIKCEKPNRN IYGFQANMEI DGRRLSLGPS NIILRGCELK NTAWALGVVV
0301: YAGGETKAML NNSGAPSKRS RLETRMNLEI ILLSLFLIVL CTIAAATAAV WLRTHRDDLD TILFYRRKDY SERPGGKNYK YYGWGWEIFF TFFMAVIVYQ
0401: IMIPISLYIS MELVRIGQAY FMTNDDQMYD ESSDSSFQCR ALNINEDLGQ IKYLFSDKTG TLTDNKMEFQ CACIEGVDYS DREPADSEHP GYSIEVDGII
0501: LKPKMRVRVD PVLLQLTKTG KATEEAKRAN EFFLSLAACN TIVPIVSNTS DPNVKLVDYQ GESPDEQALV YAAAAYGFLL IERTSGHIVI NVRGETQRFN
0601: VLGLHEFDSD RKRMSVILGC PDMSVKLFVK GADSSMFGVM DESYGGVIHE TKIQLHAYSS DGLRTLVVGM RELNDSEFEQ WHSSFEAAST ALIGRAGLLR
0701: KVAGNIETNL RIVGATAIED KLQRGVPEAI ESLRIAGIKV WVLTGDKQET AISIGFSSRL LTRNMRQIVI NSNSLDSCRR SLEEANASIA SNDESDNVAL
0801: IIDGTSLIYV LDNDLEDVLF QVACKCSAIL CCRVAPFQKA GIVALVKNRT SDMTLAIGDG ANDVSMIQMA DVGVGISGQE GRQAVMASDF AMGQFRFLVP
0901: LLLVHGHWNY QRMGYMILYN FYRNAVFVLI LFWYVLFTCY TLTTAITEWS SVLYSVIYTA IPTIIIGILD KDLGRQTLLD HPQLYGVGQR AEGYSTTLFW
1001: YTMIDTIWQS AAIFFIPMFA YWGSTIDTSS LGDLWTIAAV VVVNLHLAMD VIRWNWITHA AIWGSIVAAC ICVIVIDVIP TLPGYWAIFQ VGKTWMFWFC
1101: LLAIVVTSLL PRFAIKFLVE YYRPSDVRIA REAEKLGTFR ESQPVGVEMN LIQDPPRR

Arabidopsis Description

ALA1Phospholipid-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178UBN1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.