Factsheet for AT5G52600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56151	Canola	nucleus	80.6	81.41
Bra029113.1-P	Field mustard	nucleus	80.6	81.41
CDY51833	Canola	nucleus	79.1	79.9
Bra022602.1-P	Field mustard	nucleus	77.61	78.79
CDY27055	Canola	nucleus	77.11	78.28
CDY65324	Canola	nucleus	78.11	77.34
VIT_11s0016g05660.t01	Wine grape	nucleus	58.21	52.47
VIT_11s0016g05690.t01	Wine grape	nucleus	54.23	48.88
PGSC0003DMT400079416	Potato	nucleus	51.74	48.37
Solyc07g008010.2.1	Tomato	nucleus	50.75	48.34
AT5G14750.1	Thale cress	nucleus	37.81	37.44
AT5G40330.1	Thale cress	nucleus	38.31	35.16
AT3G27920.1	Thale cress	nucleus	37.31	32.89
GSMUA_Achr3P07950_001	Banana	nucleus	38.81	32.77
AT1G35515.1	Thale cress	nucleus	32.34	30.66
AT3G13540.1	Thale cress	nucleus	37.31	30.12
GSMUA_Achr3P27700_001	Banana	nucleus	39.3	28.83
AT4G09460.1	Thale cress	nucleus	33.33	28.39
AT4G34990.1	Thale cress	nucleus	38.31	28.1
AT2G16720.1	Thale cress	nucleus	37.31	27.88
AT1G22640.1	Thale cress	nucleus	34.33	26.85
AT4G38620.1	Thale cress	nucleus	37.31	26.6
AT5G35550.2	Thale cress	nucleus	33.33	25.67
AT2G47460.1	Thale cress	nucleus	37.31	20.22
AT5G49330.1	Thale cress	nucleus	33.33	19.59
AT3G62610.1	Thale cress	nucleus	33.33	19.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:835337	ProteinID:AAF14064.1	ProteinID:AED96239.1	EMBL:AF062912
ArrayExpress:AT5G52600	EnsemblPlantsGene:AT5G52600	RefSeq:AT5G52600	TAIR:AT5G52600	RefSeq:AT5G52600-TAIR-G	EnsemblPlants:AT5G52600.1
TAIR:AT5G52600.1	EMBL:AY519637	Symbol:AtMYB82	ProteinID:BAA98078.1	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010026	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	RefSeq:NP_680426.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF662	UniProt:Q9LTF7	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00000A9A39
EMBL:Z95805	SEG:seg	:	:	:	:

Description

MYB82Transcription factor MYB82 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF7]

Coordinates

chr5:-:21343102..21344106

Molecular Weight (calculated)

23293.6 Da

IEP (calculated)

9.384

GRAVY (calculated)

-0.901

Length

201 amino acids

Sequence
(BLAST)

001: MECKREEGKS YVKRGLWKPE EDMILKSYVE THGEGNWADI SRRSGLKRGG KSCRLRWKNY LRPNIKRGSM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT
101: DNEVKNYWNT HLNKKPNSRR QNAPESIVGA TPFTDKPVMS TELRRSHGEG GEEESNTWME ETNHFGYDVH VGSPLPLISH YPDNTLVFDP CFSFTDFFPL
201: L

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.