Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23616 | Canola | nucleus | 73.9 | 80.7 |
| CDY24177 | Canola | nucleus | 81.12 | 80.48 |
| Bra039395.1-P | Field mustard | nucleus | 80.32 | 79.68 |
| Bra027423.1-P | Field mustard | nucleus | 81.53 | 79.61 |
| CDY07085 | Canola | nucleus | 79.92 | 79.28 |
| CDY59254 | Canola | nucleus | 80.32 | 78.43 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 46.18 | 47.13 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 53.41 | 45.86 |
| GSMUA_Achr10P... | Banana | nucleus | 52.21 | 43.62 |
| Zm00001d011645_P001 | Maize | nucleus | 40.16 | 43.48 |
| VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 53.41 | 42.63 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 44.98 | 42.26 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 45.38 | 41.7 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 45.38 | 41.54 |
| Os01t0695900-01 | Rice | nucleus | 45.78 | 41.45 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 53.01 | 41.25 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 51.0 | 41.23 |
| AT5G14750.1 | Thale cress | nucleus | 33.33 | 40.89 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 43.37 | 40.3 |
| AT1G35515.1 | Thale cress | nucleus | 33.73 | 39.62 |
| KXG33190 | Sorghum | nucleus | 43.78 | 38.93 |
| AT5G40330.1 | Thale cress | nucleus | 33.73 | 38.36 |
| KRH17997 | Soybean | nucleus, plastid | 54.22 | 38.14 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 46.18 | 37.46 |
| KRH16413 | Soybean | nucleus | 54.22 | 37.4 |
| AT5G52600.1 | Thale cress | nucleus | 30.12 | 37.31 |
| AT4G09460.1 | Thale cress | nucleus | 34.94 | 36.86 |
| AT3G27920.1 | Thale cress | nucleus | 32.13 | 35.09 |
| AT1G22640.1 | Thale cress | nucleus | 36.14 | 35.02 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 52.61 | 34.93 |
| AT2G16720.1 | Thale cress | nucleus | 35.74 | 33.09 |
| AT4G38620.1 | Thale cress | nucleus | 36.55 | 32.27 |
| AT4G34990.1 | Thale cress | nucleus | 34.94 | 31.75 |
| AT5G35550.2 | Thale cress | nucleus | 28.51 | 27.2 |
| AT5G49330.1 | Thale cress | nucleus | 34.54 | 25.15 |
| AT3G62610.1 | Thale cress | nucleus | 32.13 | 23.32 |
| AT2G47460.1 | Thale cress | nucleus | 33.73 | 22.64 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:820556 | UniProt:A0A178VAR4 | ProteinID:AAC49311.1 | ProteinID:AEE75369.1 |
| ArrayExpress:AT3G13540 | EnsemblPlantsGene:AT3G13540 | RefSeq:AT3G13540 | TAIR:AT3G13540 | RefSeq:AT3G13540-TAIR-G | EnsemblPlants:AT3G13540.1 |
| TAIR:AT3G13540.1 | Symbol:ATMYB5 | EMBL:AY519587 | ProteinID:BAB01761.1 | GO:GO:0000003 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010090 | GO:GO:0010214 | GO:GO:0010468 |
| GO:GO:0016043 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0048354 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_187963.1 | ProteinID:OAP02996.1 | PFAM:PF00249 | PO:PO:0000084 |
| PO:PO:0000282 | PO:PO:0001185 | PO:PO:0009009 | PO:PO:0009089 | PO:PO:0020021 | PO:PO:0020108 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF942 | UniProt:Q38850 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000009DA15 | EMBL:X90380 | SEG:seg | : | : |
Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
Coordinates
chr3:+:4419960..4421751
Molecular Weight (calculated)
27795.0 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.705
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.