CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95511
KRH32008
KRH67189
KRH71432

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	KRG95511	AT4G09820.1	15361138
AT3G13540.1	KRH32008	AT4G09820.1	15361138
AT3G13540.1	KRH67189	AT4G09820.1	15361138
AT3G13540.1	KRH71432	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17997	Soybean	nucleus, plastid	87.53	89.27
CDY23616	Canola	nucleus	35.46	56.14
KRG94424	Soybean	nucleus	14.13	55.43
AT3G13540.1	Thale cress	nucleus	37.4	54.22
CDY24177	Canola	nucleus	36.84	52.99
CDY07085	Canola	nucleus	36.29	52.19
Bra039395.1-P	Field mustard	nucleus	36.01	51.79
Bra027423.1-P	Field mustard	nucleus	36.57	51.76
CDY59254	Canola	nucleus	36.57	51.76
GSMUA_Achr2P19380_001	Banana	nucleus	33.8	50.0
VIT_08s0007g07230.t01	Wine grape	nucleus	44.32	50.0
GSMUA_Achr10P...	Banana	nucleus	40.72	49.33
GSMUA_Achr6P14840_001	Banana	nucleus	39.34	48.97
Solyc01g005660.1.1	Tomato	nucleus, plastid	41.55	48.7
Zm00001d011645_P001	Maize	nucleus	30.19	47.39
TraesCS3D01G257800.1	Wheat	nucleus	35.18	46.86
TraesCS3A01G257800.1	Wheat	nucleus	33.8	46.04
TraesCS3B01G290600.1	Wheat	nucleus	34.35	45.59
KRH60702	Soybean	nucleus	26.04	44.76
Os01t0695900-01	Rice	nucleus	33.24	43.64
KRH04166	Soybean	nucleus	23.27	42.64
HORVU0Hr1G006810.2	Barley	nucleus	31.58	42.54
KXG33190	Sorghum	nucleus	32.96	42.5
GSMUA_Achr7P13700_001	Banana	nucleus	36.01	42.35
KRH77336	Soybean	nucleus	21.05	41.76
KRH15114	Soybean	nucleus	21.61	41.71
KRG89277	Soybean	nucleus	25.76	41.7
KRH73023	Soybean	nucleus	24.65	40.45
KRH28144	Soybean	nucleus	20.5	40.44
KRH50345	Soybean	nucleus	25.76	40.26
KRH51400	Soybean	nucleus	26.04	40.0
KRH29280	Soybean	nucleus	26.87	39.43
KRH41018	Soybean	nucleus	23.27	38.53
KRH24301	Soybean	nucleus	26.87	38.34
KRG97208	Soybean	nucleus	29.64	38.08
KRH12516	Soybean	nucleus	18.28	36.46
GSMUA_Achr5P06530_001	Banana	nucleus	37.12	35.73
KRH68929	Soybean	nucleus	23.82	35.1
KRH06443	Soybean	nucleus	26.87	33.11
KRH47884	Soybean	nucleus	26.59	33.1
KRG91990	Soybean	nucleus	24.65	32.48
KRH47591	Soybean	nucleus	23.82	32.45
KRH06175	Soybean	nucleus	24.1	32.34
KRH34791	Soybean	nucleus	24.38	32.23
KRH54016	Soybean	nucleus	26.87	32.23
KRH63931	Soybean	nucleus	26.87	32.12
KRH47594	Soybean	nucleus	24.38	32.12
KRG91991	Soybean	nucleus	23.55	31.25
KRH19274	Soybean	nucleus	26.04	30.92
KRH34790	Soybean	nucleus	23.27	30.66
KRH06177	Soybean	nucleus	24.1	30.53
KRH02634	Soybean	nucleus	25.48	29.97
KRH31822	Soybean	nucleus	25.21	26.61
KRH11988	Soybean	nucleus	24.1	26.36
KRH50769	Soybean	nucleus	24.1	25.82
KRH37017	Soybean	nucleus	23.55	25.45
KRH02323	Soybean	nucleus	24.38	25.14
KRH69237	Soybean	nucleus	25.21	24.53
KRG96503	Soybean	nucleus	23.55	24.01
KRH68241	Soybean	nucleus	23.55	23.68

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100782308	MapMan:15.5.2.1	EMBL:AB597932	EMBL:ACUP02008881	UniProt:F5HQF1
EnsemblPlantsGene:GLYMA_14G154400	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRH16413
ProteinID:KRH16413	ProteinID:KRH16413.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF740	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00020CFFD1	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:33570229..33572109

Molecular Weight (calculated)

40503.1 Da

IEP (calculated)

7.068

GRAVY (calculated)

-0.826

Length

361 amino acids

Sequence
(BLAST)

001: MRNPSLPTLA TTKTKVKNNS NKSTNNNNNI GTNYSPCCNN VGLKRGPWTP EEDEVLANYI NKEGEGRWRT LPKRAGLLRC GKSCRLRWMN YLRPSVKRGH
101: IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN THLSKKLINQ GIDPRTHKPL NPPSIAVPSS STTSTIPPSK PPPVIITNNN INPFHHDLTN
201: MFNQGVHLNH LGQHHQPPPL SNPCDNHNPV PAAATDDVSA MGFMDNNNED CNNDGININY YSDDVFSSFL NSLINDDAFE AQQQQHHVQT EIPTPSERSI
301: NPLPCDDRVD DHHLGSITTA SASQGYDDEL GVLWESPLVS ATFSQHVNDH ITKRVHDHHN Q

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.