Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000236_P001 | |
| Zm00001d019170_P001 | |
| Zm00001d026147_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13540.1 | Zm00001d000236_P001 | AT1G63650.1 | 15361138 |
| AT3G13540.1 | Zm00001d026147_P002 | AT1G63650.1 | 15361138 |
| AT3G13540.1 | Zm00001d019170_P001 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33190 | Sorghum | nucleus | 78.7 | 64.64 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 56.96 | 49.43 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 57.39 | 48.71 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 56.96 | 48.16 |
| Os01t0695900-01 | Rice | nucleus | 56.52 | 47.27 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 53.04 | 45.52 |
| CDY23616 | Canola | nucleus | 42.61 | 42.98 |
| CDY24177 | Canola | nucleus | 44.35 | 40.64 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 43.04 | 40.57 |
| CDY07085 | Canola | nucleus | 43.91 | 40.24 |
| AT3G13540.1 | Thale cress | nucleus | 43.48 | 40.16 |
| Bra039395.1-P | Field mustard | nucleus | 43.48 | 39.84 |
| CDY59254 | Canola | nucleus | 43.91 | 39.61 |
| Bra027423.1-P | Field mustard | nucleus | 43.48 | 39.22 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 46.52 | 36.9 |
| Zm00001d041853_P001 | Maize | nucleus | 36.09 | 36.73 |
| Zm00001d022628_P001 | Maize | nucleus | 34.78 | 36.7 |
| Zm00001d038338_P001 | Maize | nucleus | 40.87 | 36.43 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 48.26 | 36.04 |
| VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 48.26 | 35.58 |
| GSMUA_Achr10P... | Banana | nucleus | 46.09 | 35.57 |
| Zm00001d012255_P001 | Maize | nucleus | 38.7 | 35.46 |
| Zm00001d010201_P001 | Maize | nucleus | 38.26 | 35.34 |
| Zm00001d032024_P001 | Maize | nucleus | 38.7 | 35.04 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 48.7 | 35.0 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 45.22 | 33.88 |
| Zm00001d053220_P001 | Maize | nucleus | 38.26 | 33.85 |
| Zm00001d042665_P001 | Maize | nucleus | 38.26 | 33.59 |
| Zm00001d044975_P001 | Maize | nucleus | 37.39 | 31.62 |
| Zm00001d006236_P002 | Maize | nucleus | 36.09 | 30.4 |
| Zm00001d037118_P001 | Maize | nucleus | 36.09 | 30.4 |
| KRH16413 | Soybean | nucleus | 47.39 | 30.19 |
| Zm00001d004744_P001 | Maize | nucleus | 36.09 | 30.18 |
| KRH17997 | Soybean | nucleus, plastid | 46.09 | 29.94 |
| Zm00001d053060_P001 | Maize | nucleus | 35.65 | 28.47 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 44.35 | 27.2 |
| Zm00001d028842_P001 | Maize | nucleus | 35.65 | 24.48 |
| Zm00001d047671_P001 | Maize | nucleus | 34.78 | 23.26 |
| Zm00001d040621_P002 | Maize | nucleus | 35.65 | 23.16 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | UniProt:A0A1D6G2R9 | ProteinID:AQK97661.1 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010090 | GO:GO:0010214 |
| GO:GO:0010468 | GO:GO:0016043 | GO:GO:0030154 | GO:GO:0048354 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF942 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0008428A1A | EnsemblPlantsGene:Zm00001d011645 | EnsemblPlants:Zm00001d011645_P001 | EnsemblPlants:Zm00001d011645_T001 |
| SEG:seg | : | : | : | : | : |
Description
MYB-transcription factor 10Putative MYB DNA-binding domain superfamily protein
Coordinates
chr8:+:157426995..157428942
Molecular Weight (calculated)
24761.4 Da
IEP (calculated)
10.206
GRAVY (calculated)
-0.481
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPAVQQRG AGAIRTLKRG AWTPEEDELL ARAVAKDGEG RWRTLPRRAG LLRCGKSCRL RWMNYLRPDI KRGPIAADEE DLILRLHRLL GNRWSLIAGR
101: LPGRTDNEVK NYWNSHLSKK LVARGIDPRT HTPLPAAAAS LHSHSHRADD DSPAGAAGSS ADKTPPPLVE VEPSVAPPPA QPNSSFGDGS SGDFAGGMMG
201: LGSEGFDGVA RDTEPTAIPV SASVVFFLPL
101: LPGRTDNEVK NYWNSHLSKK LVARGIDPRT HTPLPAAAAS LHSHSHRADD DSPAGAAGSS ADKTPPPLVE VEPSVAPPPA QPNSSFGDGS SGDFAGGMMG
201: LGSEGFDGVA RDTEPTAIPV SASVVFFLPL
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Arabidopsis Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.