Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU86782 | Sorghum | nucleus | 80.23 | 78.67 |
| KRG94424 | Soybean | nucleus | 19.21 | 73.91 |
| Os01t0305900-01 | Rice | nucleus | 59.04 | 65.93 |
| Zm00001d022628_P001 | Maize | nucleus | 26.27 | 42.66 |
| Zm00001d041853_P001 | Maize | nucleus | 25.71 | 40.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.16 | 40.0 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 41.53 | 39.62 |
| Zm00001d028842_P001 | Maize | nucleus | 35.88 | 37.91 |
| PGSC0003DMT400011167 | Potato | nucleus | 28.81 | 37.78 |
| Zm00001d047671_P001 | Maize | nucleus | 36.44 | 37.5 |
| KRH31822 | Soybean | nucleus | 36.16 | 37.43 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 38.42 | 37.06 |
| Zm00001d012255_P001 | Maize | nucleus | 26.27 | 37.05 |
| Zm00001d032024_P001 | Maize | nucleus | 26.27 | 36.61 |
| KRH69237 | Soybean | nucleus | 38.14 | 36.39 |
| AT3G62610.1 | Thale cress | nucleus | 35.03 | 36.15 |
| Solyc06g009710.2.1 | Tomato | nucleus | 30.23 | 36.03 |
| Zm00001d011645_P001 | Maize | nucleus | 23.16 | 35.65 |
| Zm00001d010201_P001 | Maize | nucleus | 24.86 | 35.34 |
| Zm00001d038338_P001 | Maize | nucleus | 25.71 | 35.27 |
| Zm00001d006236_P002 | Maize | nucleus | 26.84 | 34.8 |
| Zm00001d042665_P001 | Maize | nucleus | 25.71 | 34.73 |
| PGSC0003DMT400018841 | Potato | nucleus | 29.66 | 34.65 |
| Solyc12g049350.1.1 | Tomato | nucleus | 28.53 | 34.47 |
| AT5G49330.1 | Thale cress | nucleus | 33.05 | 34.21 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 30.79 | 33.96 |
| Zm00001d053220_P001 | Maize | nucleus | 24.86 | 33.85 |
| KRG96503 | Soybean | nucleus | 33.62 | 33.62 |
| Zm00001d044975_P001 | Maize | nucleus | 25.71 | 33.46 |
| KRH68241 | Soybean | nucleus | 33.9 | 33.43 |
| AT2G47460.1 | Thale cress | nucleus | 35.03 | 33.42 |
| PGSC0003DMT400023322 | Potato | nucleus | 34.18 | 33.33 |
| Bra037419.1-P | Field mustard | nucleus | 32.2 | 33.24 |
| Solyc01g079620.2.1 | Tomato | nucleus | 31.64 | 33.14 |
| Bra036145.1-P | Field mustard | nucleus | 32.2 | 32.85 |
| Zm00001d037118_P001 | Maize | nucleus | 25.14 | 32.6 |
| Zm00001d004744_P001 | Maize | nucleus | 25.14 | 32.36 |
| KRH11988 | Soybean | nucleus | 29.94 | 32.12 |
| KRH37017 | Soybean | nucleus | 29.94 | 31.74 |
| KRH02323 | Soybean | nucleus | 31.36 | 31.71 |
| KRH50769 | Soybean | nucleus | 29.94 | 31.45 |
| Zm00001d053060_P001 | Maize | nucleus | 25.14 | 30.9 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 32.2 | 29.77 |
| Bra000453.1-P | Field mustard | nucleus | 31.07 | 29.26 |
| Bra004456.1-P | Field mustard | nucleus | 29.66 | 28.77 |
| CDY27486 | Canola | plastid | 6.5 | 9.75 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:541969 | UniProt:A0A1D6MRT2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | ProteinID:ONM31680.1 |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF595 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000844EE9F | EnsemblPlantsGene:Zm00001d040621 | EnsemblPlants:Zm00001d040621_P002 | EnsemblPlants:Zm00001d040621_T002 | SEG:seg |
Description
myb transcription factor40 myb transcription factor40
Coordinates
chr3:+:54361997..54365806
Molecular Weight (calculated)
38476.5 Da
IEP (calculated)
4.325
GRAVY (calculated)
-0.748
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKV GLKKGRWTKE EDEVLARYIK EHGEGSWRSL PKNAGGLRLV LLAGLLRCGK SCRLRWINYL RAGLKRGNIS EEEEDMIIKL HATLGNRWSL
101: IAGHLPGRTD NEIKNYWNSH LSRRAADFRD GVVVDIDLSK LPGGGKRRGG RASRGAVVAA AKEKKAKEKD DRGNSKVAEA EQQLRDTEDD DGGSVSTPRP
201: QSDDCGTAQS EEEQAQASAS GLTSDGHGPE EEEEEDPLAL SEEMVSALLA PESPKLEVGP DGSCMDSYSG PPSGESGCGS SGPSGDVAQD LDLDDDKAIM
301: DWDLMGLDIS TAGDMWDQLV WDYDETLVTE PEGGEEGHQQ QDDVMSDLFF LDNL
101: IAGHLPGRTD NEIKNYWNSH LSRRAADFRD GVVVDIDLSK LPGGGKRRGG RASRGAVVAA AKEKKAKEKD DRGNSKVAEA EQQLRDTEDD DGGSVSTPRP
201: QSDDCGTAQS EEEQAQASAS GLTSDGHGPE EEEEEDPLAL SEEMVSALLA PESPKLEVGP DGSCMDSYSG PPSGESGCGS SGPSGDVAQD LDLDDDKAIM
301: DWDLMGLDIS TAGDMWDQLV WDYDETLVTE PEGGEEGHQQ QDDVMSDLFF LDNL
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.