Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13540.1 | KRG95511 | AT4G09820.1 | 15361138 |
| AT3G13540.1 | KRH32008 | AT4G09820.1 | 15361138 |
| AT3G13540.1 | KRH67189 | AT4G09820.1 | 15361138 |
| AT3G13540.1 | KRH71432 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16413 | Soybean | nucleus | 89.27 | 87.53 |
| KRG94424 | Soybean | nucleus | 14.69 | 56.52 |
| CDY23616 | Canola | nucleus | 36.16 | 56.14 |
| AT3G13540.1 | Thale cress | nucleus | 38.14 | 54.22 |
| CDY24177 | Canola | nucleus | 38.42 | 54.18 |
| CDY07085 | Canola | nucleus | 37.85 | 53.39 |
| Bra039395.1-P | Field mustard | nucleus | 37.57 | 52.99 |
| CDY59254 | Canola | nucleus | 38.14 | 52.94 |
| Bra027423.1-P | Field mustard | nucleus | 37.85 | 52.55 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 46.89 | 51.88 |
| GSMUA_Achr10P... | Banana | nucleus | 42.37 | 50.34 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 40.96 | 50.0 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 33.9 | 49.18 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 41.81 | 48.05 |
| Zm00001d011645_P001 | Maize | nucleus | 29.94 | 46.09 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 35.03 | 45.76 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 34.18 | 45.66 |
| KRH60702 | Soybean | nucleus | 26.84 | 45.24 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 34.46 | 44.85 |
| Os01t0695900-01 | Rice | nucleus | 33.9 | 43.64 |
| KRH04166 | Soybean | nucleus | 23.73 | 42.64 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 32.2 | 42.54 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 36.72 | 42.35 |
| KRH77336 | Soybean | nucleus | 21.75 | 42.31 |
| KXG33190 | Sorghum | nucleus | 33.33 | 42.14 |
| KRG89277 | Soybean | nucleus | 26.27 | 41.7 |
| KRH15114 | Soybean | nucleus | 21.75 | 41.18 |
| KRH28144 | Soybean | nucleus | 21.19 | 40.98 |
| KRH73023 | Soybean | nucleus | 25.14 | 40.45 |
| KRH51400 | Soybean | nucleus | 26.84 | 40.43 |
| KRH50345 | Soybean | nucleus | 26.27 | 40.26 |
| KRH29280 | Soybean | nucleus | 27.68 | 39.84 |
| KRH24301 | Soybean | nucleus | 27.68 | 38.74 |
| KRH41018 | Soybean | nucleus | 23.73 | 38.53 |
| KRG97208 | Soybean | nucleus | 30.23 | 38.08 |
| KRH12516 | Soybean | nucleus | 18.93 | 37.02 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 37.85 | 35.73 |
| KRH68929 | Soybean | nucleus | 24.01 | 34.69 |
| KRH47884 | Soybean | nucleus | 27.4 | 33.45 |
| KRH06443 | Soybean | nucleus | 27.68 | 33.45 |
| KRH54016 | Soybean | nucleus | 28.25 | 33.22 |
| KRH63931 | Soybean | nucleus | 28.25 | 33.11 |
| KRH47591 | Soybean | nucleus | 24.58 | 32.83 |
| KRH06175 | Soybean | nucleus | 24.86 | 32.71 |
| KRG91990 | Soybean | nucleus | 24.86 | 32.12 |
| KRH47594 | Soybean | nucleus | 24.86 | 32.12 |
| KRH34791 | Soybean | nucleus | 24.58 | 31.87 |
| KRG91991 | Soybean | nucleus | 24.01 | 31.25 |
| KRH19274 | Soybean | nucleus | 26.55 | 30.92 |
| KRH06177 | Soybean | nucleus | 24.58 | 30.53 |
| KRH02634 | Soybean | nucleus | 25.99 | 29.97 |
| KRH34790 | Soybean | nucleus | 23.16 | 29.93 |
| KRH11988 | Soybean | nucleus | 25.14 | 26.97 |
| KRH31822 | Soybean | nucleus | 25.71 | 26.61 |
| KRH50769 | Soybean | nucleus | 24.86 | 26.11 |
| KRH37017 | Soybean | nucleus | 24.58 | 26.05 |
| KRH02323 | Soybean | nucleus | 25.14 | 25.43 |
| KRH69237 | Soybean | nucleus | 26.27 | 25.07 |
| KRG96503 | Soybean | nucleus | 24.29 | 24.29 |
| KRH68241 | Soybean | nucleus | 24.29 | 23.96 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100797847 | MapMan:15.5.2.1 | EMBL:ACUP02008020 | EnsemblPlantsGene:GLYMA_13G032200 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K7LY69 | EnsemblPlants:KRH17997 | ProteinID:KRH17997 |
| ProteinID:KRH17997.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF740 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00023CF213 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr13:+:10340143..10341938
Molecular Weight (calculated)
39466.1 Da
IEP (calculated)
7.568
GRAVY (calculated)
-0.750
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNPSSTTTT AATTTTKTKV KNNSNNNIGS NNSPCCNKVG LKRGPWTPEE DEVLANYIKK EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA
101: PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLNP ASINVPSSST TSSKPLPMII TNNHINPVHH DLTNMFNQGV
201: HQVHHLGQHH HQPPASNPYD NHNPVPAAAT GDVSAMAFMD NNNEDCNDDI NINYYSDDVF SSFLNSLIND DAFAAQQHHV QTEIPTPSER SIMNPLPCDD
301: RVGGHLGSIA TASAAQGYDD ELGVLWESPL VNAATFSQHV DDHITKRVHD HHNQ
101: PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLNP ASINVPSSST TSSKPLPMII TNNHINPVHH DLTNMFNQGV
201: HQVHHLGQHH HQPPASNPYD NHNPVPAAAT GDVSAMAFMD NNNEDCNDDI NINYYSDDVF SSFLNSLIND DAFAAQQHHV QTEIPTPSER SIMNPLPCDD
301: RVGGHLGSIA TASAAQGYDD ELGVLWESPL VNAATFSQHV DDHITKRVHD HHNQ
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Arabidopsis Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.