Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 27.04 | 55.7 |
| GSMUA_Achr11P... | Banana | nucleus | 28.01 | 51.5 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 28.01 | 49.14 |
| CDY23616 | Canola | nucleus | 36.48 | 49.12 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 38.76 | 48.77 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 27.04 | 47.98 |
| CDY24177 | Canola | nucleus | 38.76 | 47.41 |
| CDY07085 | Canola | nucleus | 38.11 | 46.61 |
| Bra039395.1-P | Field mustard | nucleus | 37.78 | 46.22 |
| AT3G13540.1 | Thale cress | nucleus | 37.46 | 46.18 |
| CDY59254 | Canola | nucleus | 38.11 | 45.88 |
| Zm00001d011645_P001 | Maize | nucleus | 33.88 | 45.22 |
| Bra027423.1-P | Field mustard | nucleus | 37.46 | 45.1 |
| GSMUA_Achr10P... | Banana | nucleus | 43.0 | 44.3 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 41.37 | 43.79 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 37.13 | 43.02 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 38.11 | 43.01 |
| VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 43.65 | 42.95 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 37.78 | 42.8 |
| GSMUA_Achr10P... | Banana | nucleus | 29.97 | 42.4 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 27.36 | 42.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.38 | 41.75 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 27.04 | 41.5 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 27.36 | 41.38 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 42.67 | 40.94 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 25.41 | 40.62 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 25.73 | 40.51 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 27.69 | 40.48 |
| GSMUA_Achr10P... | Banana | nucleus | 26.71 | 39.81 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 39.74 | 39.61 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 34.53 | 39.55 |
| Os01t0695900-01 | Rice | nucleus | 35.18 | 39.27 |
| KXG33190 | Sorghum | nucleus | 35.18 | 38.57 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 27.04 | 38.25 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 28.66 | 36.97 |
| KRH17997 | Soybean | nucleus, plastid | 42.35 | 36.72 |
| GSMUA_Achr6P09620_001 | Banana | nucleus | 23.78 | 36.5 |
| KRH16413 | Soybean | nucleus | 42.35 | 36.01 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 27.36 | 35.44 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 27.36 | 35.44 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 27.69 | 35.27 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 43.0 | 35.2 |
| GSMUA_Achr9P16040_001 | Banana | nucleus | 29.32 | 35.02 |
| GSMUA_Achr11P... | Banana | nucleus | 26.71 | 34.89 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 27.36 | 34.85 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 28.99 | 34.23 |
| GSMUA_Achr4P21700_001 | Banana | nucleus | 25.41 | 33.62 |
| GSMUA_Achr3P21000_001 | Banana | nucleus | 27.69 | 33.46 |
| GSMUA_Achr7P18550_001 | Banana | nucleus | 28.66 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 29.64 | 32.73 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 28.99 | 32.36 |
| GSMUA_Achr3P07940_001 | Banana | nucleus | 29.64 | 32.27 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 28.66 | 32.12 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 28.34 | 31.99 |
| GSMUA_Achr8P22690_001 | Banana | nucleus | 29.97 | 31.72 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 26.71 | 31.54 |
| GSMUA_Achr2P17960_001 | Banana | nucleus | 26.06 | 31.01 |
| GSMUA_Achr7P18560_001 | Banana | nucleus | 27.04 | 30.86 |
| GSMUA_Achr8P14540_001 | Banana | nucleus | 26.06 | 30.77 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 28.34 | 30.42 |
| GSMUA_Achr10P... | Banana | nucleus | 26.71 | 28.87 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.04 | 25.94 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 26.38 | 25.23 |
| GSMUA_Achr6P02530_001 | Banana | nucleus | 26.71 | 22.71 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 26.71 | 22.1 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P13700_001 | EnsemblPlants:GSMUA_Achr7T13700_001 | EnsemblPlantsGene:GSMUA_Achr7G13700_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF740 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000295CED9 | UniProt:M0THA7 | MapMan:15.5.2.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G13700_001]
Coordinates
chr7:-:11012737..11015816
Molecular Weight (calculated)
35171.3 Da
IEP (calculated)
10.300
GRAVY (calculated)
-0.765
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRRPTATP CCSKVGMKRG PWTADEDEVL ASFVRREGEG RWRTLPKRAG LLRCGKSCRL RWLNYLRPSI KRGPIAPDEE DLILRLHRLL GNRWALIAGR
101: IPGRTDNEIK NYWNTHLTKK LIKQGIDPRT HKPLPSSTDH GSPAQLVSCH PATDRDSMPQ EMGAGSSEAI AIRNDRCGYF HGLDPHHDDV AWQNCNCSKN
201: AEKELRAVLT YRKYNTANKI VVKQTHSITT ESNLTSGHCS LAQLLRRRKL QRPKGGFCLC WRMMRDDLDP LPHRRRTVRR WKDACVTRED RSPSDSWCIV
301: RVSVCYG
101: IPGRTDNEIK NYWNTHLTKK LIKQGIDPRT HKPLPSSTDH GSPAQLVSCH PATDRDSMPQ EMGAGSSEAI AIRNDRCGYF HGLDPHHDDV AWQNCNCSKN
201: AEKELRAVLT YRKYNTANKI VVKQTHSITT ESNLTSGHCS LAQLLRRRKL QRPKGGFCLC WRMMRDDLDP LPHRRRTVRR WKDACVTRED RSPSDSWCIV
301: RVSVCYG
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Arabidopsis Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.