Factsheet for GSMUA_Achr11P03960_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P19380_001
GSMUA_Achr3P07950_001
GSMUA_Achr3P27700_001
GSMUA_Achr4P29160_001
GSMUA_Achr5P06530_001
GSMUA_Achr5P10240_001
GSMUA_Achr5P20600_001
GSMUA_Achr6P14840_001
GSMUA_Achr7P13700_001
GSMUA_Achr8P11430_001
GSMUA_Achr8P19880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr5P20600_001	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr8P11430_001	AT1G63650.1	12917293
AT1G63650.1	GSMUA_Achr10P...	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr2P19380_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr5P06530_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr6P14840_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr7P13700_001	AT3G13540.1	15361138
AT1G63650.1	GSMUA_Achr3P07950_001	AT3G27920.1	12917293
AT1G63650.1	GSMUA_Achr3P27700_001	AT3G27920.1	12917293
AT1G63650.1	GSMUA_Achr3P07950_001	AT3G27920.1	15361138
AT1G63650.1	GSMUA_Achr3P27700_001	AT3G27920.1	15361138
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G14750.1	14627722
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G14750.1	14627722
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G14750.1	15361138
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G14750.1	15361138
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G14750.1	17644729
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G14750.1	17644729
AT1G63650.1	GSMUA_Achr4P29160_001	AT5G24520.1	12917293
AT1G63650.1	GSMUA_Achr5P10240_001	AT5G24520.1	12917293
AT1G63650.1	GSMUA_Achr3P07950_001	AT5G40330.1	15361138
AT1G63650.1	GSMUA_Achr3P27700_001	AT5G40330.1	15361138
AT1G63650.1	GSMUA_Achr8P19880_001	AT5G53200.1	12917293
AT1G63650.1	GSMUA_AchrUn_...	AT5G53200.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	53.63	67.52
GSMUA_Achr8P11430_001	Banana	nucleus	61.72	67.03
CDY45357	Canola	cytosol, golgi, nucleus	19.39	60.53
GSMUA_Achr11P...	Banana	nucleus	56.32	60.51
GSMUA_Achr5P20600_001	Banana	nucleus	53.12	53.57
Os04t0557500-00	Rice	mitochondrion, plasma membrane	14.84	48.89
VIT_02s0025g03450.t01	Wine grape	nucleus	47.22	44.59
VIT_15s0046g02560.t01	Wine grape	nucleus	48.57	43.7
TraesCSU01G116000.1	Wheat	nucleus	31.7	41.23
CDY39747	Canola	nucleus	38.79	41.14
CDY25513	Canola	nucleus	39.63	40.73
AT1G63650.1	Thale cress	nucleus	40.47	40.27
CDY58950	Canola	nucleus	38.79	39.86
Solyc08g081140.2.1	Tomato	nucleus	41.82	39.62
CDY34367	Canola	nucleus	39.8	39.6
Bra027653.1-P	Field mustard	nucleus	39.8	39.6
HORVU2Hr1G096810.5	Barley	nucleus	37.44	39.57
TraesCS2D01G406900.1	Wheat	nucleus	37.77	39.51
Bra027796.1-P	Field mustard	nucleus	40.3	39.44
TraesCS2A01G409600.2	Wheat	nucleus, plastid	36.93	39.25
CDY08314	Canola	nucleus	39.97	39.17
KRH41187	Soybean	nucleus	41.32	38.89
TraesCS2B01G428000.1	Wheat	nucleus	37.44	38.74
TraesCS4B01G397400.1	Wheat	nucleus	36.59	38.48
Bra025508.1-P	Field mustard	nucleus	40.81	38.47
TraesCS5A01G489500.1	Wheat	nucleus	36.59	38.07
KRH59908	Soybean	nucleus	40.47	38.03
AT5G41315.2	Thale cress	nucleus	41.32	37.98
KRH48144	Soybean	nucleus	41.48	37.85
KRH65046	Soybean	nucleus	41.15	37.71
TraesCSU01G029400.1	Wheat	nucleus	36.26	37.59
TraesCS4B01G397800.1	Wheat	nucleus	32.21	37.45
TraesCS2A01G409400.1	Wheat	nucleus	35.58	37.15
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	34.91	37.03
TraesCS2D01G406800.1	Wheat	plastid	29.01	36.99
TraesCS5A01G558500.1	Wheat	nucleus	36.42	36.92
Os01t0577300-00	Rice	cytosol	7.59	36.89
Os04t0557800-00	Rice	mitochondrion	35.58	36.76
TraesCS2D01G575600.3	Wheat	nucleus, plastid	36.09	36.33
TraesCS4D01G224600.1	Wheat	nucleus	33.9	36.09
CDY72121	Canola	nucleus	18.55	35.71
CDY51155	Canola	mitochondrion, nucleus	32.21	35.24
CDX91907	Canola	nucleus	32.21	35.11
OQU82117	Sorghum	nucleus	34.91	35.08
CDY70506	Canola	nucleus	31.53	35.02
CDY07214	Canola	mitochondrion, nucleus	31.87	34.87
OQU82120	Sorghum	nucleus	34.57	34.86
Zm00001d026147_P002	Maize	nucleus	36.09	34.74
OQU81560	Sorghum	nucleus	33.9	34.13
Zm00001d000236_P001	Maize	nucleus, plastid	31.7	33.75
AT4G00480.2	Thale cress	nucleus	32.55	33.28
GSMUA_Achr3P17620_001	Banana	nucleus	31.53	33.16
PGSC0003DMT400032140	Potato	nucleus	18.89	31.11
GSMUA_Achr6P21490_001	Banana	nucleus	33.9	30.88
TraesCS4B01G397300.1	Wheat	nucleus	20.91	30.47
TraesCSU01G237100.1	Wheat	nucleus	17.88	28.88
TraesCSU01G228400.1	Wheat	nucleus	17.88	28.88
Bra000970.1-P	Field mustard	nucleus	31.53	28.59
CDX77694	Canola	nucleus	11.97	28.06
OQU82119	Sorghum	nucleus	24.28	26.37
Os01t0576100-00	Rice	nucleus	13.49	25.48
Bra037343.1-P	Field mustard	cytosol	30.02	25.04
GSMUA_Achr10P...	Banana	nucleus	18.55	23.97
Os11t0258700-00	Rice	mitochondrion	19.06	23.4
GSMUA_Achr1P18910_001	Banana	nucleus	15.35	23.1
GSMUA_Achr2P08590_001	Banana	nucleus	10.29	22.93
GSMUA_Achr7P00800_001	Banana	cytosol	8.77	22.22
GSMUA_Achr3P30620_001	Banana	nucleus	11.97	21.91
GSMUA_Achr7P27600_001	Banana	nucleus	12.31	21.86
GSMUA_Achr10P...	Banana	nucleus	14.67	21.8
GSMUA_Achr11P...	Banana	nucleus	16.36	21.65
GSMUA_Achr8P05170_001	Banana	nucleus	7.25	21.39
GSMUA_Achr8P05350_001	Banana	nucleus	16.19	21.29
GSMUA_Achr7P14640_001	Banana	nucleus	17.37	21.28
GSMUA_Achr1P28110_001	Banana	nucleus	17.71	21.13
GSMUA_Achr7P04720_001	Banana	nucleus	16.69	21.11
GSMUA_Achr3P26180_001	Banana	nucleus	10.46	21.02
GSMUA_Achr9P20820_001	Banana	nucleus	12.98	20.92
GSMUA_Achr8P26280_001	Banana	cytosol	16.19	20.73
GSMUA_Achr3P00370_001	Banana	plastid	15.35	20.68
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	16.53	20.63
GSMUA_Achr4P23070_001	Banana	nucleus	10.79	20.45
GSMUA_Achr6P35730_001	Banana	nucleus	16.69	20.16
GSMUA_Achr4P03160_001	Banana	nucleus	10.96	19.88
GSMUA_Achr2P18140_001	Banana	nucleus	15.51	19.83
GSMUA_Achr4P16980_001	Banana	nucleus	16.69	19.53
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	18.89	19.48
GSMUA_Achr8P26460_001	Banana	nucleus	10.62	18.98
GSMUA_AchrUn_...	Banana	nucleus	10.12	18.63
GSMUA_AchrUn_...	Banana	cytosol	16.02	18.38
GSMUA_Achr11P...	Banana	nucleus	14.5	17.88
GSMUA_Achr8P14720_001	Banana	nucleus	16.69	16.92
GSMUA_Achr5P18100_001	Banana	nucleus	12.98	15.75
GSMUA_Achr1P08130_001	Banana	mitochondrion	13.66	14.52
GSMUA_Achr4P14580_001	Banana	nucleus	8.09	14.46
GSMUA_Achr4P03170_001	Banana	nucleus	7.59	13.2

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr11G03960_001	EnsemblPlants:GSMUA_Achr11P03960_001	EnsemblPlants:GSMUA_Achr11T03960_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0RP76	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF38	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000294E461	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor GLABRA 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G03960_001]

Coordinates

chr11:+:2832025..2834908

Molecular Weight (calculated)

66567.5 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.439

Length

593 amino acids

Sequence
(BLAST)

001: MDVGTIHEAL SPKHLRKQLA ATVREIQWSY AIFWSPSTGQ PGVLAWSDGY YNGDIKTRKM TQPMELKADQ MGLQRSKQLR ELYGSLSAGD NNQQTRRPSA
101: SLSPEDLTDA EWYYLVCMTF TFTPGQGLPG KAFATNQHIW LNNAQFADSK IFSRSLLAKS ASIQTLVCIP FAGGVLELGT TEKVLEDPAL IKQISSFFRE
201: MPNPVGSEKS ASSPQMTEND EDILCPSLDN DVDSSMALEE HDLMSVSPDD SSNNPWLGAL NSNECLPMPC VGAQRVVTSA KKEIVSNQML DGIEEGNCSK
301: HNSLELDGDG SRYAKTVAVI LRNSKPVLFF LTISRESSFV VWRRGLSTPK PFTGTPQTLL KKILMDRRWL HGGHMEKAWR PEGESGGSYL LSEMRREKLN
401: EKFVVLRSLI PSISKVDKAS ILDDATRYLK QLERRVQELE SCRETAELSG RDRRKQHPDV SERTSDNYIH REITDGRKAS ANKRKARDMD EAEAEHEHHC
501: VEVSVTMKEK EVVVKMHCPW REYLLPEIVE SMSNLHLDPL SVQSSTVDGM LAMTVKSKLR STTVASPVMI KRSLQRILEL TISSAYILLG FYV

Best Arabidopsis Sequence Match ( AT5G41315.3 )
(BLAST)

001: MDEETMATGQ NRTTVPENLK KHLAVSVRNI QWSYGIFWSV SASQSGVLEW GDGYYNGDIK TRKTIQASEI KADQLGLRRS EQLSELYESL SVAESSSSGV
101: AAGSQVTRRA SAAALSPEDL ADTEWYYLVC MSFVFNIGEG MPGRTFANGE PIWLCNAHTA DSKVFSRSLL AKSAAVKTVV CFPFLGGVVE IGTTEHITED
201: MNVIQCVKTS FLEAPDPYAT ILPARSDYHI DNVLDPQQIL GDEIYAPMFS TEPFPTASPS RTTNGFDQEH EQVADDHDSF MTERITGGAS QVQSWQLMDD
301: ELSNCVHQSL NSSDCVSQTF VEGAAGRVAY GARKSRVQRL GQIQEQQRNV KTLSFDPRND DVHYQSVIST IFKTNHQLIL GPQFRNCDKQ SSFTRWKKSS
401: SSSSGTATVT APSQGMLKKI IFDVPRVHQK EKLMLDSPEA RDETGNHAVL EKKRREKLNE RFMTLRKIIP SINKIDKVSI LDDTIEYLQE LERRVQELES
501: CRESTDTETR GTMTMKRKKP CDAGERTSAN CANNETGNGK KVSVNNVGEA EPADTGFTGL TDNLRIGSFG NEVVIELRCA WREGVLLEIM DVISDLHLDS
601: HSVQSSTGDG LLCLTVNCKH KGSKIATPGM IKEALQRVAW IC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.