CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03290
EES05725
KXG31995
KXG33190
OQU81560
OQU82117
OQU82119
OQU82120

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	OQU81560	AT1G63650.1	12917293
AT1G63650.1	OQU82117	AT1G63650.1	12917293
AT1G63650.1	OQU82119	AT1G63650.1	12917293
AT1G63650.1	OQU82120	AT1G63650.1	12917293
AT1G63650.1	KXG31995	AT1G71030.1	15361138
AT1G63650.1	KXG33190	AT3G13540.1	15361138
AT1G63650.1	EES05725	AT5G24520.1	12917293
AT1G63650.1	EES03290	AT5G53200.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82117	Sorghum	nucleus	79.59	79.32
OQU81560	Sorghum	nucleus	78.4	78.27
OQU82119	Sorghum	nucleus	57.31	61.72
TraesCS2D01G406900.1	Wheat	nucleus	57.14	59.26
HORVU2Hr1G096810.5	Barley	nucleus	54.93	57.58
TraesCS2A01G409400.1	Wheat	nucleus	55.44	57.39
TraesCS2B01G428000.1	Wheat	nucleus	55.44	56.89
TraesCS2A01G409600.2	Wheat	nucleus, plastid	53.91	56.81
TraesCS2D01G406800.1	Wheat	plastid	44.56	56.34
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	52.72	55.46
Os04t0557800-00	Rice	mitochondrion	53.23	54.53
TraesCS4B01G397400.1	Wheat	nucleus	51.87	54.08
TraesCSU01G116000.1	Wheat	nucleus	41.84	53.95
TraesCSU01G029400.1	Wheat	nucleus	52.38	53.85
TraesCS5A01G489500.1	Wheat	nucleus	52.04	53.68
TraesCS4D01G224600.1	Wheat	nucleus	49.66	52.42
TraesCS5A01G558500.1	Wheat	nucleus	51.87	52.14
TraesCSU01G228400.1	Wheat	nucleus	31.8	50.95
TraesCSU01G237100.1	Wheat	nucleus	31.8	50.95
TraesCS2D01G575600.3	Wheat	nucleus, plastid	51.02	50.93
Os01t0577300-00	Rice	cytosol	10.2	49.18
TraesCS4B01G397800.1	Wheat	nucleus	40.82	47.06
TraesCS4B01G397300.1	Wheat	nucleus	31.97	46.19
GSMUA_Achr11P...	Banana	nucleus	35.37	44.16
Os01t0576100-00	Rice	nucleus	22.28	41.72
Os11t0258700-00	Rice	mitochondrion	32.82	39.96
GSMUA_Achr8P11430_001	Banana	nucleus	36.05	38.83
GSMUA_Achr11P...	Banana	nucleus	34.18	36.41
GSMUA_Achr11P...	Banana	nucleus	34.86	34.57
VIT_02s0025g03450.t01	Wine grape	nucleus	36.73	34.39
GSMUA_Achr5P20600_001	Banana	nucleus	34.35	34.35
VIT_15s0046g02560.t01	Wine grape	nucleus	37.07	33.08
Solyc08g081140.2.1	Tomato	nucleus	34.52	32.43
AT1G63650.1	Thale cress	nucleus	32.14	31.71
Bra027796.1-P	Field mustard	nucleus	32.48	31.52
Bra025508.1-P	Field mustard	nucleus	33.67	31.48
Bra027653.1-P	Field mustard	nucleus	31.63	31.21
KRH41187	Soybean	nucleus	32.99	30.79
KRH59908	Soybean	nucleus	32.48	30.27
AT5G41315.2	Thale cress	nucleus	31.97	29.15
KRH48144	Soybean	nucleus	31.97	28.92
KRH65046	Soybean	nucleus	31.46	28.59
AT4G00480.2	Thale cress	nucleus	27.72	28.1
CDX77694	Canola	nucleus	11.05	25.69
Bra000970.1-P	Field mustard	nucleus	26.7	24.01
PGSC0003DMT400032140	Potato	nucleus	14.46	23.61
OQU88697	Sorghum	nucleus	26.7	23.19
EES01345	Sorghum	nucleus	17.69	21.49
Bra037343.1-P	Field mustard	cytosol	25.68	21.24
OQU80776	Sorghum	nucleus	9.18	20.53
OQU75588	Sorghum	nucleus	9.18	20.53
KXG25462	Sorghum	nucleus	9.35	19.78
OQU80778	Sorghum	nucleus	8.84	19.26
EER97058	Sorghum	cytosol, nucleus, plastid	9.01	19.2
EER93685	Sorghum	mitochondrion	11.73	18.55
OQU86344	Sorghum	nucleus	7.82	17.97
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	8.5	17.92
OQU80777	Sorghum	nucleus	8.5	17.86
EES10849	Sorghum	nucleus	10.37	17.68
EER99201	Sorghum	nucleus	8.67	17.23
KXG37671	Sorghum	nucleus	10.37	17.13
EER99993	Sorghum	nucleus	17.86	16.88
KXG39824	Sorghum	nucleus	9.35	16.87
KXG39194	Sorghum	nucleus	20.07	16.69
EES19274	Sorghum	nucleus	16.16	16.18
OQU92034	Sorghum	nucleus	8.5	15.77
KXG37866	Sorghum	nucleus	9.69	15.36
OQU92032	Sorghum	nucleus	8.33	14.41
EER93684	Sorghum	nucleus	9.35	14.29
OQU75589	Sorghum	nucleus	8.67	13.25
OQU77369	Sorghum	nucleus	9.35	13.1
KXG24110	Sorghum	nucleus	8.33	12.31

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:C5YDM3	ncoils:Coil	ProteinID:EES12641.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
ProteinID:KXG26881.1	ProteinID:KXG26884.1	InterPro:MYC/MYB_N	EnsemblPlants:OQU82120	ProteinID:OQU82120	ProteinID:OQU82120.1
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	SMART:SM00353
EnsemblPlantsGene:SORBI_3006G175700	SUPFAM:SSF47459	UniParc:UPI0001A87614	RefSeq:XP_002448313.1	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:53102701..53111029

Molecular Weight (calculated)

65223.0 Da

IEP (calculated)

5.079

GRAVY (calculated)

-0.409

Length

588 amino acids

Sequence
(BLAST)

001: MAPSASPVQE GLQQAAERQL MRNQLAAAAR SINWTYAFFW SISSTQPGRR VLTWTDGFYN GEVKTRKISS SVELTADQLV MQRSEQLREL YEALLSGECD
101: RRPAPVRPVS SLSPEDLGDT EWYYVVCMTY TFRPGQGLPG RSFASNEYVW LCNAHLAASK AFPRALLAKS ASIQSIVCIP LMGGVLELGT TDTVPEDPDL
201: ISRATAAFWE PQCPTYSEYP STNPSANETG EAADDDVVVF EDLDPNAMDM ETMTAFGGHG QELGEAESLF NANLKYITKE FDEFYSLCEE MDMQQLEDDW
301: TMVNGSNFED PSSLQPAPPG ATTANVADTS STRADSSRAT SFMAWTRSSQ SYSDEVAAVS VIEEPQKLLK KVVAGSGAWA NYGGRDTIGT FQQSGIKNHI
401: MSQRKRREKL NEMFLILKSL VPSVHKVDKA SILAETIAYL KELQRRIQEL ESSRELTTHP SETTRSIKKT RGNGSVRKKP YAGSKRKSPD DLEKKHEHPW
501: ILPKDGTSNI TVTVGNTDVL LEVQCRWEEL LMTRVFDAIK SLHLDVLSVQ DSAPDGFIGL KIRAQFVGSG AIMPWMISEA LRKAIGKR

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.