Factsheet for Bra000970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70506	Canola	nucleus	78.13	95.69
CDX91907	Canola	nucleus	76.45	91.91
AT4G00480.2	Thale cress	nucleus	64.07	72.24
Bra037343.1-P	Field mustard	cytosol	77.98	71.73
Os04t0557500-00	Rice	mitochondrion, plasma membrane	10.7	38.89
GSMUA_Achr11P...	Banana	nucleus	26.45	36.73
GSMUA_Achr8P11430_001	Banana	nucleus	28.59	34.25
GSMUA_Achr11P...	Banana	nucleus	28.9	34.24
GSMUA_Achr11P...	Banana	nucleus	28.59	31.53
Bra025508.1-P	Field mustard	nucleus	29.2	30.37
Bra027796.1-P	Field mustard	nucleus	27.98	30.2
Bra027653.1-P	Field mustard	nucleus	27.22	29.87
TraesCSU01G116000.1	Wheat	nucleus	20.34	29.17
HORVU2Hr1G096810.5	Barley	nucleus	24.92	29.06
TraesCS2A01G409600.2	Wheat	nucleus, plastid	24.77	29.03
TraesCS2B01G428000.1	Wheat	nucleus	25.38	28.97
TraesCS4B01G397400.1	Wheat	nucleus	24.92	28.9
GSMUA_Achr5P20600_001	Banana	nucleus	25.84	28.74
TraesCS2D01G406900.1	Wheat	nucleus	24.62	28.4
TraesCS5A01G489500.1	Wheat	nucleus	24.62	28.25
TraesCS2A01G409400.1	Wheat	nucleus	24.31	27.99
TraesCSU01G029400.1	Wheat	nucleus	24.46	27.97
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	23.85	27.91
Os01t0577300-00	Rice	cytosol	5.2	27.87
TraesCS5A01G558500.1	Wheat	nucleus	24.16	27.01
TraesCS4B01G397800.1	Wheat	nucleus	20.95	26.86
OQU82120	Sorghum	nucleus	24.01	26.7
TraesCS2D01G406800.1	Wheat	plastid	18.96	26.67
Os04t0557800-00	Rice	mitochondrion	23.24	26.48
Zm00001d000236_P001	Maize	nucleus, plastid	22.48	26.39
TraesCS2D01G575600.3	Wheat	nucleus, plastid	23.24	25.81
OQU82117	Sorghum	nucleus	23.24	25.76
Bra037887.1-P	Field mustard	nucleus	19.57	25.75
TraesCS4D01G224600.1	Wheat	nucleus	21.87	25.67
Zm00001d026147_P002	Maize	nucleus	23.7	25.16
OQU81560	Sorghum	nucleus	22.63	25.13
Bra024993.1-P	Field mustard	nucleus	13.15	22.81
TraesCSU01G228400.1	Wheat	nucleus	11.47	20.44
TraesCSU01G237100.1	Wheat	nucleus	11.31	20.16
TraesCS4B01G397300.1	Wheat	nucleus	12.39	19.9
Bra013264.1-P	Field mustard	nucleus	9.02	19.87
Bra017520.1-P	Field mustard	nucleus	14.07	18.47
Bra017523.1-P	Field mustard	nucleus	14.22	18.34
Bra039279.1-P	Field mustard	nucleus	12.84	18.3
Bra004532.1-P	Field mustard	nucleus	13.46	18.11
Bra017527.1-P	Field mustard	nucleus	6.12	17.7
Os01t0576100-00	Rice	nucleus	8.41	17.52
Bra038458.1-P	Field mustard	nucleus	11.93	17.29
OQU82119	Sorghum	nucleus	14.37	17.22
Bra012720.1-P	Field mustard	nucleus	11.93	17.11
Os11t0258700-00	Rice	mitochondrion	12.39	16.77
Bra010617.1-P	Field mustard	nucleus	8.41	16.47
Bra011790.1-P	Field mustard	nucleus	8.41	16.37
Bra024998.1-P	Field mustard	nucleus	14.22	16.03
Bra024992.1-P	Field mustard	nucleus	6.57	15.87
Bra013128.1-P	Field mustard	nucleus	6.27	15.36
Bra010178.1-P	Field mustard	nucleus	13.76	15.0
Bra013263.1-P	Field mustard	nucleus	5.96	14.39
Bra039924.1-P	Field mustard	nucleus	6.73	14.06
Bra033273.1-P	Field mustard	nucleus	12.54	14.04
Bra030210.1-P	Field mustard	nucleus	6.73	13.66
Bra039926.1-P	Field mustard	nucleus	5.96	13.45
Bra030208.1-P	Field mustard	nucleus	5.66	12.17
Bra039927.1-P	Field mustard	nucleus	5.35	11.08
Bra030207.1-P	Field mustard	nucleus	5.5	11.04

Protein Annotations

MapMan:15.5.32	Gene3D:2.60.40.150	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra000970	EnsemblPlants:Bra000970.1	EnsemblPlants:Bra000970.1-P
InterPro:C2_dom	InterPro:C2_domain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR000008	InterPro:IPR011598	InterPro:IPR035892	InterPro:IPR036638
UniProt:M4C9U1	InterPro:MYC/MYB_N	PFAM:PF00168	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF38	SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF49562	UniParc:UPI0002540776	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT4G00480 (E=2e-199) ATMYC1, myc1 | myc-related transcription factor (MYC1)

Coordinates

chrA03:+:14178724..14182754

Molecular Weight (calculated)

74415.9 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.519

Length

654 amino acids

Sequence
(BLAST)

001: MSLTMDDGAE APRGRRIRRN SLLSKQLAVA VKSVRWSYAI FWSSSPTQSG VLEWGEGCYN GELKKRKKRY EVHYKHVLQR SNQLRKLYLC MREGDSTNTI
101: STTDDDDGYH NCNSKTSMLL SPDDLSDEEW YYVVSMSYVF SPSQCLPGRA LATGETIWLC NAQYADSKLF SRSLLARTVV CFPYLGGVIE LGVTELISED
201: PSLLRHIKSC LLETSKPDCP SNDFTAPQDN DDDKKNQMKI KISEVNSALQ ENQQIQFGIS DLMLDEDLHY KTTVSTLLKY AADKSKMKNS HHRQPVLVSS
301: NSGSSFLRWK QPNSNPLLKH SNSQNVLRKI LHDVPLMHSI DTKRMSTNKM FGLNQDDPSV KRKENEKFSV LRAMVPTVNE VDKEEILNNT IKYLQELEER
401: VEELESCMGS VNFVGKQRKT KKSLNDSVLI EETSGNYDDS TNIDGNSGET DQVTVLRDET HLRVKLKETE VVMEVRCSYR DYIVADIMET LSKLHMDAFS
501: VRSHTLNGFL TLNLKAKLRG AAVASVGMIK RELRRVIGRP VYYVLIQCGT KEYRSKLSKG HNDNALWNQK FVFDFPMSQW KKLTHIKFKT MDKELFKDGG
601: FVGETIIDLK GIITEGGDRG YMEVKPAPYN VVLDDDTFKG VLKLGFRFTA AVTQ

Best Arabidopsis Sequence Match ( AT4G00480.1 )
(BLAST)

001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF

Arabidopsis Description

ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.