Factsheet for Bra013128.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93135	Canola	nucleus	97.0	97.0
CDX89627	Canola	nucleus	96.63	96.63
GSMUA_Achr8P05170_001	Banana	nucleus	33.71	44.78
Solyc01g106460.2.1	Tomato	nucleus	40.45	44.44
GSMUA_Achr7P00800_001	Banana	cytosol	34.83	39.74
GSMUA_Achr3P30620_001	Banana	nucleus	42.32	34.88
VIT_03s0088g01240.t01	Wine grape	nucleus	44.57	34.59
KRH49880	Soybean	nucleus	41.95	34.04
GSMUA_Achr7P27600_001	Banana	nucleus	41.95	33.53
GSMUA_Achr2P08590_001	Banana	nucleus	33.33	33.46
GSMUA_Achr4P03160_001	Banana	nucleus	40.82	33.33
KRH10664	Soybean	nucleus	45.69	33.06
PGSC0003DMT400013074	Potato	nucleus	43.45	32.86
KRH21680	Soybean	nucleus, vacuole	46.07	32.71
GSMUA_AchrUn_...	Banana	nucleus	39.33	32.61
GSMUA_Achr3P26180_001	Banana	nucleus	35.96	32.54
GSMUA_Achr8P26460_001	Banana	nucleus	40.45	32.53
GSMUA_Achr4P23070_001	Banana	nucleus	36.7	31.31
Os03t0725800-01	Rice	nucleus	41.95	31.2
Bra039924.1-P	Field mustard	nucleus	36.33	30.99
KXG37671	Sorghum	nucleus	41.2	30.9
Bra011790.1-P	Field mustard	nucleus	38.2	30.36
Bra010617.1-P	Field mustard	nucleus	37.83	30.24
Zm00001d033848_P004	Maize	nucleus	40.82	29.95
HORVU4Hr1G009440.2	Barley	nucleus	38.2	29.91
Bra030210.1-P	Field mustard	nucleus	34.83	28.88
TraesCS4B01G056600.2	Wheat	nucleus	40.45	28.88
Zm00001d013370_P001	Maize	plastid	39.7	28.42
TraesCS4D01G056900.2	Wheat	nucleus	39.7	28.27
TraesCS4A01G257900.2	Wheat	nucleus	38.95	27.59
Bra039926.1-P	Field mustard	nucleus	28.84	26.55
Bra039927.1-P	Field mustard	nucleus	30.71	25.95
Bra030208.1-P	Field mustard	nucleus	28.09	24.67
Bra030207.1-P	Field mustard	nucleus	29.59	24.23
GSMUA_Achr4P14580_001	Banana	nucleus	29.21	23.49
Bra017527.1-P	Field mustard	nucleus	17.98	21.24
GSMUA_Achr4P03170_001	Banana	nucleus	26.59	20.82
Bra013263.1-P	Field mustard	nucleus	18.35	18.08
Bra024992.1-P	Field mustard	nucleus	15.73	15.5
Bra039279.1-P	Field mustard	nucleus	19.48	11.33
Bra004532.1-P	Field mustard	nucleus	19.85	10.91
Bra017523.1-P	Field mustard	nucleus	19.85	10.45
Bra038458.1-P	Field mustard	nucleus	17.6	10.42
Bra010178.1-P	Field mustard	nucleus	22.85	10.17
Bra037887.1-P	Field mustard	nucleus	18.73	10.06
Bra024998.1-P	Field mustard	nucleus	21.72	10.0
Bra012720.1-P	Field mustard	nucleus	16.85	9.87
Bra017520.1-P	Field mustard	nucleus	17.98	9.64
Bra033273.1-P	Field mustard	nucleus	20.22	9.25
Bra024993.1-P	Field mustard	nucleus	11.98	8.49
Bra025508.1-P	Field mustard	nucleus	19.48	8.27
Bra027796.1-P	Field mustard	nucleus	18.73	8.25
Bra027653.1-P	Field mustard	nucleus	17.6	7.89
Bra000970.1-P	Field mustard	nucleus	15.36	6.27
Bra037343.1-P	Field mustard	cytosol	15.73	5.91
Bra013264.1-P	Field mustard	nucleus	3.0	2.69

Protein Annotations

EnsemblPlants:Bra013128.1	EnsemblPlants:Bra013128.1-P	EnsemblPlantsGene:Bra013128	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR23042	PANTHER:PTHR23042:SF100	PFAM:PF00010	PFscan:PS50888	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025409FE	UniProt:M4D9G8	MapMan:15.5.32	MapMan:25.4.1.7	:

Description

AT4G37850 (E=1e-023) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA03:+:20305898..20307513

Molecular Weight (calculated)

29665.9 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.284

Length

267 amino acids

Sequence
(BLAST)

001: MMTNFPTPEE LNDILSLPSL QTMEAQLYSN QSPVVTTLNA EAAKQLKHRS YMNTTTNQCS SGFGEYGAMG NLQPKKEPTL LAQRNVSRGV SQARDHIMAE
101: RKRREKLSQR FIALSTIVPG LKKTDKASVL GGTIKYLKHL QDRVRFLEEQ ASQRTIESVV YLNKSRLSVA DTELECMALP EIEARSSGKN VLIRVHCERR
201: KGVVEITMAE IEKLKLTVIN SSVVTFGSSS LHLTIISQMG EGFNITTKDV ATSIKSSLEA FMNANLV

Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.